Amsterdam Gastroenterology Endocrinology Metabolism (AMC)

Research output

Research output per year 1980 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 2024

• 12757 Article
• 1667 Review article
• 745 Comment/Letter to the editor
• 517 Chapter
• 921 More
  • 355 Editorial
  • 290 Phd-Thesis - Research and graduation internal
  • 70 Erratum/Corrigendum
  • 64 Conference contribution
  • 53 Letter
  • 24 Meeting Abstract
  • 14 Book editing
  • 14 Other contribution
  • 6 Report
  • 6 Short survey
  • 5 Book
  • 4 Phd-Thesis - Research and graduation external
  • 3 Digital or Visual Products
  • 3 Web publication or website
  • 2 Abstract
  • 2 Poster
  • 2 Phd-Thesis - Research internal and graduation external
  • 1 Foreword/postscript
  • 1 Paper
  • 1 Patent
  • 1 Preprint

Research output per year

Research output per year

Search results

• 2024

  CNNs vs. Transformers: Performance and Robustness in Endoscopic Image Analysis

  Kusters, C. H. J., Boers, T. G. W., Jaspers, T. J. M., Jukema, J. B., Jong, M. R., Fockens, K. N., de Groof, A. J., Bergman, J. J., van der Sommen, F. & de With, P. H. N., 2024, Applications of Medical Artificial Intelligence - 2nd International Workshop, AMAI 2023, Held in Conjunction with MICCAI 2023, Proceedings. Wu, S., Shabestari, B. & Xing, L. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 14313 LNCS. p. 21-31 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14313 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)

• Investigating the Impact of Image Quality on Endoscopic AI Model Performance

  Jaspers, T. J. M., Boers, T. G. W., Kusters, C. H. J., Jong, M. R., Jukema, J. B., de Groof, A. J., Bergman, J. J., de With, P. H. N. & van der Sommen, F., 2024, Applications of Medical Artificial Intelligence - 2nd International Workshop, AMAI 2023, Held in Conjunction with MICCAI 2023, Proceedings. Wu, S., Shabestari, B. & Xing, L. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 14313 LNCS. p. 32-41 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14313 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)
• 2023

  A method for quantification of changes in leg muscle fiber orientations

  Secondulfo, L., Suskens, J. J. M., Kilic, O., Mazzoli, V., Maas, M., Tol, J. L., Nederveen, A. J., Hooijmans, M. T. & Strijkers, G. J., 2023, ISMRM.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• A Novel High-Throughput Framework to Quantify Spatio-Temporal Tumor Clonal Dynamics

  Baglamis, S., Saha, J., der Heijden, M. V., Miedema, D. M., van Gent, D., Krawczyk, P. M., Vermeulen, L. & Sheraton, V. M., 2023, International Conference on Computational Science. p. 345-359 15 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Barrett's Lesion Detection using a minimal Integer-based Neural Network for Embedded Systems Integration

  Boers, T. G. W., Kusters, C. H. J., Fockens, K. N., Jukema, J. B., Jong, M. R., de Groof, J., Bergman, J. J., van der Sommen, F. & de With, P. H. N., 2023, Medical Imaging 2023: Computer-Aided Diagnosis. Iftekharuddin, K. M. & Chen, W. (eds.). SPIE, Vol. 12465. 1246527. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12465).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Deformable Image Registration with Geometry-informed Implicit Neural Representations

  van Harten, L. D., van Herten, R. L. M., Stoker, J. & Išgum, I., 2023, Medical Imaging with Deep Learning 2023, MIDL 2023. Oguz, I., Noble, J., Li, X., Styner, M., Baumgartner, C., Rusu, M., Heinmann, T., Kontos, D., Landman, B. & Dawant, B. (eds.). ML Research Press, Vol. 227. p. 730-742 (Proceedings of Machine Learning Research).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Improving the Reliability of Medical Diagnostic Models through Rule-Based Decision Deferral

  Bereska, J. I., Marquering, H., Besselink, M., Stoker, J. & Verpalen, I., 3 Oct 2023, Proceedings of the Inaugural 2023 Summer Symposium Series 2023. Soh, H., Geib, C. & Petrick, R. (eds.). AAAI Press, p. 122-126 5 p. (Proceedings of the Inaugural 2023 Summer Symposium Series 2023).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Interactive Multi-interest Process Pattern Discovery

  Vazifehdoostirani, M., Genga, L., Lu, X., Verhoeven, R., van Laarhoven, H. & Dijkman, R., 2023, Business Process Management - 21st International Conference, BPM 2023, Proceedings. Di Francescomarino, C., Burattin, A., Janiesch, C. & Sadiq, S. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 14159 LNCS. p. 303-319 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14159 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)

• Modeling Barrett’s Esophagus Progression Using Geometric Variational Autoencoders

  van Veldhuizen, V., Vadgama, S., de Boer, O., Meijer, S. & Bekkers, E. J., 2023, Cancer Prevention Through Early Detection - 2nd International Workshop, CaPTion 2023, Held in Conjunction with MICCAI 2023, Proceedings. Ali, S., van der Sommen, F., van Eijnatten, M., Kolenbrander, I., Papież, B. W. & Jin, Y. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 14295 LNCS. p. 132-142 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14295 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Parameter Estimation of A Physiological Diabetes Model Using Neural Networks

  Moreira, A., Philipps, M. & Riel, N. V., 2023, CIBCB 2023 - 20th IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology. Institute of Electrical and Electronics Engineers Inc., (CIBCB 2023 - 20th IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Real-time Barrett's neoplasia characterization in NBI videos using an int8-based quantized neural network

  Kusters, C. H. J., Boers, T. G. W., Jukema, J. B., Jong, M. R., Fockens, K. N., de Groof, A. J., Bergman, J. J., van der Sommen, F. & de With, P. H. N., 2023, Medical Imaging 2023: Computer-Aided Diagnosis. Iftekharuddin, K. M. & Chen, W. (eds.). SPIE, Vol. 12465. 124651P. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12465).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Understanding the Dynamics of the Proliferative Phase in Local Burn Wound Healing: A Computational Model

  Bumbuc, R. V., Korkmaz, H. I., van Zuijlen, P. P. M., Vermeulen, L. & Sheraton, V. M., 2023, Proceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023. Jiang, X., Wang, H., Alhajj, R., Hu, X., Engel, F., Mahmud, M., Pisanti, N., Cui, X. & Song, H. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 3676-3683 (Proceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2022

  A CAD System for Real-Time Characterization of Neoplasia in Barrett’s Esophagus NBI Videos

  Kusters, C. H. J., Boers, T. G. W., Jukema, J. B., Jong, M. R., Fockens, K. N., de Groof, A. J., Bergman, J. J., der Sommen, F. V. & de With, P. H. N., 2022, Cancer Prevention Through Early Detection - 1st International Workshop, CaPTion 2022, Held in Conjunction with MICCAI 2022, Proceedings. Ali, S., van der Sommen, F., van Eijnatten, M., Kolenbrander, I., Papież, B. W. & Jin, Y. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 13581 LNCS. p. 89-98 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13581 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  2 Citations (Scopus)

• Accelerating IVIM and DTI for assessing microstructural changes after acute hamstring injury

  Rauh, S. S., Monte, J. R. C., Hooijmans, M. T., Suskens, J. J. M., Gurney-Champion, O. J., Tol, J. L., Maas, M., Nederveen, A. J. & Strijkers, G. J., 2022, ISMRM.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Comparing Training Strategies Using Multi-Assessor Segmentation Labels for Barrett’s Neoplasia Detection

  Boers, T. G. W., Kusters, C. H. J., Fockens, K. N., Jukema, J. B., Jong, M. R., de Groof, J., Bergman, J. J., van der Sommen, F. & de With, P. H. N., 2022, Cancer Prevention Through Early Detection - 1st International Workshop, CaPTion 2022, Held in Conjunction with MICCAI 2022, Proceedings. Ali, S., van der Sommen, F., van Eijnatten, M., Kolenbrander, I., Papież, B. W. & Jin, Y. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 13581 LNCS. p. 131-138 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13581 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)

• Covered Information Disentanglement: Model Transparency via Unbiased Permutation Importance

  Pereira, J. P. B., Stroes, E. S. G., Zwinderman, A. H. & Levin, E., 30 Jun 2022, Proceedings of the 36th AAAI Conference on Artificial Intelligence, AAAI 2022. Association for the Advancement of Artificial Intelligence, Vol. 36. p. 7984-7992 (Proceedings of the 36th AAAI Conference on Artificial Intelligence, AAAI 2022).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  2 Citations (Scopus)

• Efficient endoscopic frame informativeness assessment by reusing the encoder of the primary CAD task

  Mammadli, F., van der Sommen, F., Boers, T., van der Putten, J., Fockens, K. N., Jukema, J. B., de Jong, M. R., Bergman, J. J. G. H. M. & de With, P. H. N., 2022, Medical Imaging 2022: Computer-Aided Diagnosis. Drukker, K. & Iftekharuddin, K. M. (eds.). SPIE, Vol. 12033. 120331C. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12033).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Population and Individual Level Meal Response Patterns in Continuous Glucose Data

  de Carvalho, D. F., Kaymak, U., van Gorp, P. & van Riel, N., 2022, Information Processing and Management of Uncertainty in Knowledge-Based Systems - 19th International Conference, IPMU 2022, Proceedings. Ciucci, D., Couso, I., Medina, J., Ślęzak, D., Petturiti, D., Bouchon-Meunier, B. & Yager, R. R. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 1602 CCIS. p. 235-247 13 p. (Communications in Computer and Information Science; vol. 1602 CCIS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2021

  Developing a Visual Analysis Platform of Human Rabies for Hubei Province of China (VAP-HRHB)

  Liu, K., Wu, W., Zhang, Q., Cai, K. & Zhang, L., 2021, Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021. Huang, Y., Kurgan, L., Luo, F., Hu, X. T., Chen, Y., Dougherty, E., Kloczkowski, A. & Li, Y. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 994-1001 (Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• EVALUATING SELF-SUPERVISED LEARNING METHODS FOR DOWNSTREAM CLASSIFICATION OF NEOPLASIA IN BARRETT’S ESOPHAGUS

  Cornelissen, S., van der Putten, J. A., Boers, T. G. W., Jukema, J. B., Fockens, K. N., Bergman, J. J. G. H. M., van der Sommen, F. & de With, P. H. N., 2021, 2021 IEEE International Conference on Image Processing, ICIP 2021 - Proceedings. IEEE Computer Society, Vol. 2021-September. p. 66-70 (Proceedings - International Conference on Image Processing, ICIP).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)

• Interpretable Models via Pairwise Permutations Algorithm

  Maasland, T., Pereira, J., Bastos, D., de Goffau, M., Nieuwdorp, M., Zwinderman, A. H. & Levin, E., 2021, Machine Learning and Principles and Practice of Knowledge Discovery in Databases - International Workshops of ECML PKDD 2021, Proceedings. Kamp, M., Koprinska, I., Bibal, A., Bouadi, T., Frénay, B., Galárraga, L., Oramas, J., Adilova, L., Krishnamurthy, Y., Kang, B., Largeron, C., Lijffijt, J., Viard, T., Welke, P., Ruocco, M., Aune, E., Gallicchio, C., Schiele, G., Pernkopf, F., Blott, M., Fröning, H., Schindler, G., Guidotti, R., Monreale, A., Rinzivillo, S., Biecek, P., Ntoutsi, E., Pechenizkiy, M., Rosenhahn, B., Buckley, C., Cialfi, D., Lanillos, P., Ramstead, M., Verbelen, T., Ferreira, P. M., Andresini, G., Malerba, D., Medeiros, I., Fournier-Viger, P., Nawaz, M. S., Ventura, S., Sun, M., Zhou, M., Bitetta, V., Bordino, I., Ferretti, A., Gullo, F., Ponti, G., Severini, L., Ribeiro, R., Gama, J., Gavaldà, R., Cooper, L., Ghazaleh, N., Richiardi, J., Roqueiro, D., Saldana Miranda, D., Sechidis, K. & Graça, G. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 1524 CCIS. p. 15-25 (Communications in Computer and Information Science).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)

• Specialized Software Tool for Pattern Recognition of Biological Objects

  Kulik, S. D. & Levin, E. O., 2021, Brain-Inspired Cognitive Architectures for Artificial Intelligence: BICA*AI 2020 - Proceedings of the 11th Annual Meeting of the BICA Society. Samsonovich, A. V., Gudwin, R. R. & Simões, A. D. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 1310. p. 173-180 8 p. (Advances in Intelligent Systems and Computing; vol. 1310).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)

• Towards Evidence-Based Analysis of Palliative Treatments for Stomach and Esophageal Cancer Patients: a Process Mining Approach

  Pijnenborg, P., Verhoeven, R., Firat, M., Laarhoven, H. V. & Genga, L., 31 Oct 2021, Proceedings - 2021 3rd International Conference on Process Mining, ICPM 2021. Di Ciccio, C., Di Francescomarino, C. & Soffer, P. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 136-143 8 p. (Proceedings - 2021 3rd International Conference on Process Mining, ICPM 2021).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  4 Citations (Scopus)

• Untangling the Small Intestine in 3D cine-MRI using Deep Stochastic Tracking

  van Harten, L. D., de Jonge, C. S., Stoker, J. & Išgum, I., 2021, Proceedings of the 4th Conference on Medical Imaging with Deep Learning, MIDL 2021. Heinrich, M., Dou, Q., de Bruijne, M., Lellmann, J., Schlaefer, A. & Ernst, F. (eds.). ML Research Press, Vol. 143. p. 802-812 (Proceedings of Machine Learning Research).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  3 Citations (Scopus)

• Untangling the small intestine in 4D MRI using deep stochastic tracking

  van Harten, L. D., de Jonge, C. S., Stoker, J. & Isgum, I., 2021, Medical Imaging with Deep Learning.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2020

  A Review of Artificial Intelligence Applications in Bacterial Genomics

  Xie, J., Zhang, L. & Xiao, M., 16 Dec 2020, Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020. Park, T., Cho, Y-R., Hu, X. T., Yoo, I., Woo, H. G., Wang, J., Facelli, J., Nam, S. & Kang, M. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1870-1876 (Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)

• Detection of frame informativeness in endoscopic videos using image quality and recurrent neural networks

  Boers, T. G. W., van der Putten, J., de Groof, J., Struyvenberg, M., Fockens, K., Curvers, W., Schoon, E., van der Sommen, F., Bergman, J. & de With, P. H. N., 2020, Medical Imaging 2020: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, Vol. 11313. 2545734. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11313).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  3 Citations (Scopus)

• First steps into endoscopic video analysis for Barrett's cancer detection: Challenges and opportunities

  van der Putten, J., de Groof, J., van der Sommen, F., Struyvenberg, M., Zinger, S., Curvers, W., Schoon, E., Bergman, J. & de With, P. H. N., 2020, Medical Imaging 2020: Computer-Aided Diagnosis. Hahn, H. K. & Mazurowski, M. A. (eds.). SPIE, Vol. 11314. 1131431. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11314).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  2 Citations (Scopus)

• Manifold mixing for stacked regularization

  Pereira, J., Stroes, E. S. G., Groen, A. K., Zwinderman, A. H. & Levin, E., 2020, Machine Learning and Knowledge Discovery in Databases - International Workshops of ECML PKDD 2019, Proceedings. Cellier, P. & Driessens, K. (eds.). Springer, Vol. 1167 CCIS. p. 444-452 9 p. (Communications in Computer and Information Science; vol. 1167 CCIS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  3 Citations (Scopus)

• Using bioinformatics methods to explore the connections between expression and subcellular localization of proteins and gastric cancer progression

  Tang, Z., Xiao, M., Deng, S. & Zhang, L., 16 Dec 2020, Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020. Park, T., Cho, Y-R., Hu, X. T., Yoo, I., Woo, H. G., Wang, J., Facelli, J., Nam, S. & Kang, M. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1862-1869 (Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2019

  A novel clinical gland feature for detection of early Barrett's neoplasia using volumetric laser endomicroscopy

  Scheeve, T., Struyvenberg, M. R., Curvers, W. L., de Groof, A. J., Schoon, E. J., Bergman, J. J. G. H. M., van der Sommen, F. & de With, P. H. N., 2019, Medical Imaging 2019: Computer-Aided Diagnosis. Mori, K. & Hahn, H. K. (eds.). SPIE, Vol. 10950. 109501Y. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  2 Citations (Scopus)

• Computer-aided classification of colorectal polyps using blue-light and linked-color imaging

  Scheeve, T., Schreuder, R-M., van der Sommen, F., Ijspeert, J. E. G., Dekker, E., Schoon, E. J. & de With, P. H. N., 2019, Medical Imaging 2019: Computer-Aided Diagnosis. Mori, K. & Hahn, H. K. (eds.). SPIE, Vol. 10950. 1095012. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  2 Citations (Scopus)

• Deep learning biopsy marking of early neoplasia in barrett's esophagus by combining wle and BLI modalities

  Putten, J. V. D., Wildeboer, R., Groof, J. D., Sloun, R. V., Struyvenberg, M., Sommen, F. V. D., Zinger, S., Curvers, W., Schoon, E., Bergman, J. & Peter, H. N. D. W., 2019, ISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, Vol. 2019-April. p. 1127-1131 (Proceedings - International Symposium on Biomedical Imaging).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  11 Citations (Scopus)

• Graph space embedding

  Pereira, J., Groen, A. K., Stroes, E. S. G. & Levin, E., 2019, Proceedings of the 28th International Joint Conference on Artificial Intelligence, IJCAI 2019. Kraus, S. (ed.). International Joint Conferences on Artificial Intelligence, Vol. 2019-August. p. 3253-3259 (IJCAI International Joint Conference on Artificial Intelligence).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  3 Citations (Scopus)

• Indoleamine 2, 3-dioxygenase-1 (IDO1) activity protects M. tuberculosis in macrophages from antibiotics

  Guo, L., Dijkhuis, A., van der Wel, N. N. & Lutter, R., 2019, .. European Respiratory Journal: European Respiratory Society, Vol. 54.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Informative Frame Classification of Endoscopic Videos Using Convolutional Neural Networks and Hidden Markov Models

  van der Putten, J., de Groof, J., van der Sommen, F., Struyvenberg, M., Zinger, S., Curvers, W., Schoon, E., Bergman, J. & de With, P. H. N., 2019, 2019 IEEE International Conference on Image Processing, ICIP 2019 - Proceedings. IEEE Computer Society, Vol. 2019-September. p. 380-384 (Proceedings - International Conference on Image Processing, ICIP).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  12 Citations (Scopus)

• Pseudo-labeled Bootstrapping and Multi-stage Transfer Learning for the Classification and Localization of Dysplasia in Barrett’s Esophagus

  van der Putten, J., de Groof, J., van der Sommen, F., Struyvenberg, M., Zinger, S., Curvers, W., Schoon, E., Bergman, J. & de With, P. H. N., 2019, Machine Learning in Medical Imaging - 10th International Workshop, MLMI 2019, Held in Conjunction with MICCAI 2019, Proceedings. Suk, H-I., Liu, M. & Yan, P. (eds.). Springer, Vol. 11861 LNCS. p. 169-177 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  Open Access
  17 Citations (Scopus)

• Tissue segmentation in volumetric laser endomicroscopy data using FusionNet and a domain-specific loss function

  van der Putten, J., van der Sommen, F., Struyvenberg, M., de Groof, J., Curvers, W., Schoon, E., Bergman, J. J. G. H. M. M. & de With, P. H. N., 2019, Medical Imaging 2019: Image Processing. Angelini, E. D. & Landman, B. A. (eds.). SPIE, Vol. 10949. 109492J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  Open Access
  8 Citations (Scopus)
• 2018

  A hybrid segmentation method for partitioning the liver based on 4D DCE-MR images

  Zhang, T., Wu, Z., Runge, J. H., Lavini, C., Stoker, J., van Gulik, T., Cieslak, K. P., van Vliet, L. J. & Vos, F. M., 2018, Medical Imaging 2018: Image Processing. Angelini, E. D. & Landman, B. A. (eds.). SPIE, Vol. 10574. 1057434. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  3 Citations (Scopus)

• Probabilistic tractography for complex fiber orientations with automatic model selection

  Versteeg, E., Vos, F. M., Kwakkel, G., van der Helm, F. C. T., Arkesteijn, J. A. M. & Filatova, O., 2018, Computational Diffusion MRI - MICCAI Workshop, 2017. Kaden, E., Grussu, F., Ning, L., Tax, C. M. W. & Veraart, J. (eds.). Springer, p. 117-128 12 p. (Mathematics and Visualization).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)
• 2017

  Spatially-controlled illumination with rescan confocal microscopy enhances image quality, resolution and reduces photodamage

  Krishnaswami, V., De Luca, G. M. R., Breedijk, R. M. P., Van Noorden, C. J. F., Manders, E. M. M. & Hoebe, R. A., 2017, Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXIV. Brown, T. G., Wilson, T. & Cogswell, C. J. (eds.). SPIE, 100700G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10070).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2016

  Improved registration of DCE-MR images of the liver using a prior segmentation of the region of interest

  Zhang, T., Li, Z., Runge, J. H., Lavini, C., Stoker, J., van Gulik, T. M., van Vliet, L. J. & Vos, F. M., 4 Apr 2016, Improved registration of DCE-MR images of the liver using a prior. Styner, M. A. (ed.). SPIE, Vol. 9784. p. 978443-1 978443 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  5 Citations (Scopus)
• 2015

  Connection forms for beating the heart LV mechanics challenge (Methods)

  Mensch, A., Piuze, E., Lehnert, L., Bakermans, A. J., Sporring, J., Strijkers, G. J. & Siddiqi, K., 2015, Statistical Atlases and Computational Models of the Heart: Imaging and Modelling Challenges - 5th International Workshop, STACOM 2014 Held in Conjunction with MICCAI 2014, Revised Selected Papers. Pop, M., Mansi, T., Camara, O., Sermesant, M., Young, A. & Rhode, K. (eds.). Springer Verlag, p. 83-92 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8896).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Estimating diffusion properties in complex fiber configurations based on structure-adaptive multi-valued tensor-field filtering

  Yang, J., Poot, D. H. J., Arkesteijn, G. A. M., Caan, M. W., Van Vliet, L. J. & Vos, F. M., 2015, Medical Imaging 2015: Image Processing. Styner, M. A. & Ourselin, S. (eds.). SPIE, 7 p. 941320. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9413).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Rank-2 model-order selection in diffusion tensor MRI: Infromation complexity based on the total Kullback-Leibler divergence

  Yang, J., Poot, D. H. J., Caan, M. W. A., Vos, F. M. & Van Vliet, L. J., 21 Jul 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015. IEEE Computer Society, p. 926-929 4 p. 7164022. (Proceedings - International Symposium on Biomedical Imaging; vol. 2015-July).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)
• 2013

  A model development pipeline for Crohn's disease severity assessment from magnetic resonance images

  Schüffler, P. J., Mahapatra, D., Tielbeek, J. A. W., Vos, F. M., Makanyanga, J., Pendsé, D. A., Nio, C. Y., Stoker, J., Taylor, S. A. & Buhmann, J. M., 2013, Abdominal Imaging: Computation and Clinical Applications - 5th International Workshop, Held in Conjunction with MICCAI 2013, Proceedings. p. 1-10 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8198 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  6 Citations (Scopus)

• Atlases of cardiac fiber differential geometry

  Piuze, E., Lombaert, H., Sporring, J., Strijkers, G. J., Bakermans, A. J. & Siddiqi, K., 2013, Functional Imaging and Modeling of the Heart - 7th International Conference, FIMH 2013, Proceedings. p. 442-449 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7945 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  10 Citations (Scopus)

• Infrared dermal thermography on diabetic feet soles to predict ulcerations: A case study

  Liu, C., Van Der Heijden, F., Klein, M. E., Van Baal, J. G., Bus, S. A. & Van Netten, J. J., 2013, Advanced Biomedical and Clinical Diagnostic Systems XI. 85720N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8572).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  33 Citations (Scopus)

• Modeling light propagation in transmission and backscattering optical coherence tomography

  Duc Nguyen, V., Faber, D. J., van der Pol, E., van Leeuwen, T. G. & Kalkman, J., 2013, Adaptive Optics: Methods, Analysis and Applications, AO 2013. Optica Publishing Group (formerly OSA), JTu4A.19. (Optics InfoBase Conference Papers).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2012

  Functional Optical Biopsy of epithelial tumors

  Faber, D. J., De Bruin, D. M., Wessels, R. & Van Leeuwen, T. G., 2012, 2012 IEEE Photonics Conference, IPC 2012. p. 74-75 2 p. 6358495. (2012 IEEE Photonics Conference, IPC 2012).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review