Amsterdam Neuroscience - Brain Imaging (VUmc)

Research output

Research output per year 1982 2017 2018 2021 2022 2023 2024

• 1557 Article
• 172 Meeting Abstract
• 138 Review article
• 65 Comment/Letter to the editor
• 184 More
  • 36 Conference contribution
  • 33 Editorial
  • 32 Phd-Thesis - Research and graduation internal
  • 29 Chapter
  • 20 Letter
  • 8 Paper
  • 8 Poster
  • 8 Erratum/Corrigendum
  • 3 Short survey
  • 3 Patent
  • 1 Book
  • 1 Report
  • 1 Inaugural speech
  • 1 Abstract

Research output per year

Research output per year

Search results

• 2024

  Leveraging Ellipsoid Bounding Shapes and Fast R-CNN for Enlarged Perivascular Spaces Detection and Segmentation

  Zabihi, M., Tangwiriyasakul, C., Ingala, S., Lorenzini, L., Camarasa, R., Barkhof, F., de Bruijne, M., Cardoso, M. J. & Sudre, C. H., 2024, Machine Learning in Medical Imaging - 14th International Workshop, MLMI 2023, Held in Conjunction with MICCAI 2023, Proceedings. Cao, X., Ouyang, X., Xu, X., Rekik, I. & Cui, Z. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 14349 LNCS. p. 325-334 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14349 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2023

  A Coupled-Mechanisms Modelling Framework for Neurodegeneration

  He, T., Thompson, E., Schroder, A., Oxtoby, N. P., Abdulaal, A., Barkhof, F. & Alexander, D. C., 2023, Medical Image Computing and Computer Assisted Intervention – MICCAI 2023 - 26th International Conference, Proceedings. Greenspan, H., Madabhushi, A., Mousavi, P., Salcudean, S., Duncan, J., Syeda-Mahmood, T. & Taylor, R. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 14227 LNCS. p. 459-469 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14227 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)

• DeepBrainPrint: A Novel Contrastive Framework for Brain MRI Re-Identification

  Puglisi, L. & The Alzheimer's Disease Neuroimaging Initiative, 2023, Medical Imaging with Deep Learning 2023, MIDL 2023. Oguz, I., Noble, J., Li, X., Styner, M., Baumgartner, C., Rusu, M., Heinmann, T., Kontos, D., Landman, B. & Dawant, B. (eds.). ML Research Press, Vol. 227. p. 716-729 (Proceedings of Machine Learning Research).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2021

  An Automated and High Precision Quantitative Analysis of the ACR Phantom

  Markiewicz, P. J., da Costa-Luis, C., Dickson, J., Barnes, A., Krokos, G., MacKewn, J., Clark, T., Wimberley, C., MacNaught, G., Yaqub, M. M., Gispert, J. D., Hutton, B. F., Marsden, P., Hammers, A., Reader, A. J., Ourselin, S., Herholz, K., Matthews, J. C. & Barkhof, F., 2021, 2021 IEEE Nuclear Science Symposium and Medical Imaging Conference Record, NSS/MIC 2021 and 28th International Symposium on Room-Temperature Semiconductor Detectors, RTSD 2022. Tomita, H. & Nakamura, T. (eds.). Institute of Electrical and Electronics Engineers Inc., (2021 IEEE Nuclear Science Symposium and Medical Imaging Conference Record, NSS/MIC 2021 and 28th International Symposium on Room-Temperature Semiconductor Detectors, RTSD 2022).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• A Python Hands-on Tutorial on Network and Topological Neuroscience

  Centeno, E. G. Z., Moreni, G., Vriend, C., Douw, L. & Santos, F. A. N. B., 2021, Geometric Science of Information - 5th International Conference, GSI 2021, Proceedings. Nielsen, F. & Barbaresco, F. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 12829 LNCS. p. 665-673 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12829 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Lesion-wise evaluation for effective performance monitoring of small object segmentation

  Groothuis, I., Sudre, C. H., Ingala, S., Barnes, J., Gispert, J. D., Sørensen, L., Pai, A., Nielsen, M., Ourselin, S., Cardoso, M. J., Barkhof, F. & Modat, M., 2021, Medical Imaging 2021: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, Vol. 11596. 1159608. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11596).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2020

  Disentangling human error from the ground truth in segmentation of medical images

  Zhang, L., Tanno, R., Xu, M-C., Jin, C., Jacob, J., Ciccarelli, O., Barkhof, F. & Alexander, D. C., 2020, 34th Conference on Neural Information Processing Systems, NeurIPS 2020. Neural Information Processing Systems Foundation, Vol. 2020-December. (Advances in Neural Information Processing Systems).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  35 Citations (Scopus)

• Learning to segment when experts disagree

  Zhang, L., Tanno, R., Bronik, K., Jin, C., Nachev, P., Barkhof, F., Ciccarelli, O. & Alexander, D. C., 2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 - 23rd International Conference, Proceedings. Martel, A. L., Abolmaesumi, P., Stoyanov, D., Mateus, D., Zuluaga, M. A., Zhou, S. K., Racoceanu, D. & Joskowicz, L. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 12261 LNCS. p. 179-190 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  10 Citations (Scopus)

• Textural Feature Based Segmentation: A Repeatable and Accurate Segmentation Approach for Tumors in PET Images

  Pfaehler, E., Mesotten, L., Kramer, G., Thomeer, M., Vanhove, K., de Jong, J., Adriaensens, P., Hoekstra, O. S. & Boellaard, R., 1 Jan 2020, Medical Image Understanding and Analysis - 24th Annual Conference, MIUA 2020, Proceedings. Papiez, B. W., Namburete, A. I. L., Yaqub, M. & Noble, J. A. (eds.). Springer, p. 3-14 12 p. (Communications in Computer and Information Science; vol. 1248 CCIS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  2 Citations (Scopus)
• 2019

  Deep Learning Based Approach to Quantification of PET Tracer Uptake in Small Tumors

  Dal Toso, L., Pfaehler, E., Boellaard, R., Schnabel, J. A. & Marsden, P. K., 1 Jan 2019, Machine Learning for Medical Image Reconstruction - 2nd International Workshop, MLMIR 2019, held in Conjunction with MICCAI 2019, Proceedings. Knoll, F., Maier, A., Rueckert, D. & Ye, J. C. (eds.). Springer, Vol. 11905 LNCS. p. 181-192 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11905 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  Open Access
  1 Citation (Scopus)
• 2018

  A MR Guided De-noising for PET Using IHYPR-LR

  Cheng, J-C. K., Matthews, J., Boellaard, R. & Sossi, V., 2018, 2017 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2017 - Conference Proceedings. Institute of Electrical and Electronics Engineers Inc., 8532650. (2017 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2017 - Conference Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)

• Deep Learning for Quality Control of Subcortical Brain 3D Shape Models

  Petrov, D., Gutman, B. A., Kuznetsov, E., Ching, C. R. K., Alpert, K., Zavaliangos-Petropulu, A., Isaev, D., Turner, J. A., van Erp, T. G. M., Wang, L., Schmaal, L., Veltman, D. & Thompson, P. M., 2018, Shape in Medical Imaging - International Workshop, ShapeMI 2018, Held in Conjunction with MICCAI 2018, Proceedings. Lombaert, H., Paniagua, B., Egger, B., Lüthi, M., Reuter, M. & Wachinger, C. (eds.). Springer Verlag, Vol. 11167 LNCS. p. 268-276 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  2 Citations (Scopus)

• Dynamic PET Reconstruction Utilizing a Spatiotemporal 4D De-noising Kernel

  Cheng, J-C. K., Bevington, C., Rahmim, A., Klyuzhin, I., Matthews, J., Boellaard, R. & Sossi, V., 2018, 2018 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2018 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 8824452. (2018 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2018 - Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  2 Citations (Scopus)

• Evaluation of HYPR-OSEM Using Experimental Phantom and Clinical Patient Data

  Cheng, J. C. K., Matthews, J., Boellaard, R., Janzen, I., Anton-Rodriguez, J. & Sossi, V., 12 Nov 2018, 2017 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2017 - Conference Proceedings. Institute of Electrical and Electronics Engineers Inc., 8532597. (2017 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2017 - Conference Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Evaluation of SRW-OSEM Using Clinical Data

  Cheng, J-C. K., Matthews, J., Boellaard, R. & Sossi, V., 2018, 2017 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2017 - Conference Proceedings. Institute of Electrical and Electronics Engineers Inc., 8533090. (2017 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2017 - Conference Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Imaging biomarkers for the diagnosis of Prion disease

  Canas, L. S., Yvernault, B., Sudre, C., De Vita, E., Cardoso, M. J., Thornton, J., Barkhof, F., Ourselin, S., Mead, S. & Modat, M., 1 Jan 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 1057405

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)

• Performance Improvements in HYPR-OSEM

  Cheng, J-C. K., Matthews, J., Boellaard, R., Janzen, I., Anton-Rodriguez, J. & Sossi, V., 2018, 2017 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2017 - Conference Proceedings. Institute of Electrical and Electronics Engineers Inc., 8532928. (2017 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2017 - Conference Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2017

  Classification of major depressive disorder via multi-site weighted LASSO model

  Zhu, D., Riedel, B. C., Jahanshad, N., Groenewold, N. A., Stein, D. J., Gotlib, I. H., Sacchet, M. D., Dima, D., Cole, J. H., Fu, C. H. Y., Walter, H., Veer, I. M., Frodl, T., Schmaal, L., Veltman, D. J. & Thompson, P. M., 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Maier-Hein, L., Franz, A., Jannin, P., Duchesne, S., Descoteaux, M. & Collins, D. L. (eds.). Springer Verlag, p. 159-167 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10435 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  3 Citations (Scopus)

• Improving the Signal-To-Noise ratio in static PET reconstruction using HYPR-OSEM

  Cheng, J. C. K., Matthews, J. & Boellaard, R., 16 Oct 2017, 2016 IEEE Nuclear Science Symposium, Medical Imaging Conference and Room-Temperature Semiconductor Detector Workshop, NSS/MIC/RTSD 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-January. 8069454

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  2 Citations (Scopus)

• Large-scale classification of major depressive disorder via distributed Lasso

  Zhu, D., Li, Q., Riedel, B. C., Jahanshad, N., Hibar, D. P., Veer, I. M., Walter, H., Schmaal, L., Veltman, D. J., Grotegerd, D., Dannlowski, U., Sacchet, M. D., Gotlib, I. H., Ye, J. & Thompson, P. M., 2017, 12th International Symposium on Medical Information Processing and Analysis. Romero, E., Lepore, N., Brieva, J. & Larrabide, I. (eds.). SPIE, 101600Y. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 10160).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  2 Citations (Scopus)

• Machine learning for large-scale quality control of 3D shape models in neuroimaging

  Petrov, D., Gutman, B. A., Yu, S. H. J., Alpert, K., Zavaliangos-Petropulu, A., Isaev, D., Turner, J. A., van Erp, T. G. M., Wang, L., Schmaal, L., Veltman, D. & Thompson, P. M., 2017, Machine Learning in Medical Imaging - 8th International Workshop, MLMI 2017, Held in Conjunction with MICCAI 2017, Proceedings. Shi, Y., Suk, H-I., Suzuki, K. & Wang, Q. (eds.). Springer Verlag, p. 371-378 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10541 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  3 Citations (Scopus)

• Semi-automatic hippocampus delineation algorithm using surface fairing

  Bartel, F., Vrenken, H., van Herk, M., de Ruiter, M. B., Belderbos, J., Hulshof, J. & de Munck, J. C., 2017, EMBEC and NBC 2017 - Joint Conference of the European Medical and Biological Engineering Conference EMBEC 2017 and the Nordic-Baltic Conference on Biomedical Engineering and Medical Physics, NBC 2017. Springer Verlag, Vol. 65. p. 956-959 4 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2016

  A historical journey through the discovery of spectral/fourier domain OCT

  de Boer, J., 18 Apr 2016, Clinical and Translational Biophotonics, Translational 2016. Optica Publishing Group (formerly OSA), (Optics InfoBase Conference Papers).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  Open Access

• Effects of boundary conditions in TOF-MLAA reconstruction for PET/MR

  Cheng, J. C. K., Salomon, A., Yaqub, M. & Boellaard, R., 3 Oct 2016, 2015 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2015. Institute of Electrical and Electronics Engineers Inc., 7582046

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Magnetic field and PET: Does the effect of magnetic field vary with the intrinsic resolution of PET scanners?

  Cheng, J. C., Laforest, R. & Boellaard, R., 10 Mar 2016, 2014 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2014. Institute of Electrical and Electronics Engineers Inc., 7431012

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)
• 2008

  Clustering of BOLD signals recorded during rest reveals more inter-subject constancy than EEG-fMRI correlation maps

  Gonçalves, S. I., Pouwels, P. J. W., Kuijer, J. P. A., Heethaar, R. M. & De Munck, J. C., 2008, Proceedings of VIPIMAGE 2007 - 1st ECCOMAS Thematic Conference on Computational Vision and Medical Image Processing. p. 233-236 4 p. (Proceedings of VIPIMAGE 2007 - 1st ECCOMAS Thematic Conference on Computational Vision and Medical Image Processing).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Implementation of physiological gating on the high resolution research tomograph

  Huisman, M. C., Van Den Brom, C. E., Buijs, F. L., Molthoff, C. F. M., Boellaard, R. & Lammertsma, A. A., 1 Dec 2008, 2008 IEEE Nuclear Science Symposium Conference Record, NSS/MIC 2008. p. 4767-4769 3 p. 4774308

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Inter-subject variability of resting state brain activity explored using a data and model-driven approach in combination with EEG-fMRI

  Gonçalves, S. I., Bijma, F., Pouwels, P. J. W., Jonker, M. A., Kuijer, J. P. A., Heethaar, R. M., Lopes Da Silva, F. H. & De Munck, J. C., 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI. p. 608-611 4 p. 4541069. (2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  2 Citations (Scopus)

• Modulation of the fractal properties of low frequency endogenous brain oscillations in functional MRI by a working memory task

  Barnes, A., Honey, G., Wink, A. M., Bullmore, E. T. & Suckling, J., 24 Nov 2008, 2008 International Joint Conference on Neural Networks, IJCNN 2008. p. 3762-3765 4 p. 4634338. (Proceedings of the International Joint Conference on Neural Networks).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2007

  Correction for desynchronization of EEG and fMRI clocks through data interpolation optimizes artifact reduction

  Gonçalves, S. I., Pouwels, P. J. W., Kuijer, J. P. A., Heethaar, R. M. & De Munck, J. C., 2007, 29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07. p. 1590-1594 5 p. 4352609. (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  2 Citations (Scopus)

• The relation between alpha band power, heart rate and fMRI

  De Munck, J. C., Gonçalves, S. I., Faes, T. J. C., Pouwels, P. J. W., Kuijer, J. P. A., Heethaar, R. M. & Lopes Da Silva, F. H., 2007, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. p. 436-439 4 p. 4193316. (2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  3 Citations (Scopus)
• 2006

  Signal processing aspects of simultaneously recorded EEG, pulse and fMRI

  De Munck, J. C., Goncalves, S. I., Pouwels, P. W. J., Kuijer, J. P. A., Heethaa, R. M. & Lopes Da Silva, F. H., 2006, 2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. p. 1064-1067 4 p. 1625105. (2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings; vol. 2006).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  3 Citations (Scopus)
• 2005

  High resolution PET imaging characteristics of68Ga, 124i and89Zr compared to18F

  De Jong, H. W. A. M., Perk, L., Visser, G. W. M., Boellaard, R., Van Dongen, G. A. M. S. & Lammertsma, A. A., 1 Dec 2005, 2005 IEEE Nuclear Science Symposium Conference Record -Nuclear Science Symposium and Medical Imaging Conference. Vol. 3. p. 1624-1627 4 p. 1596630

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  17 Citations (Scopus)
• 2004

  Performance characteristics of the high resolution research tomograph - Comparison of three prototypes

  De Jong, H. W. A. M., Knoess, C., Lammertsma, A. A., Lenox, M., Vollmar, S., Casey, M., Wienhard, K., Heiss, W. D. & Boellaard, R., 1 Dec 2004, vu medical center. Vol. 6. p. 3437-3439 3 p. (IEEE Nuclear Science Symposium Conference Record).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  9 Citations (Scopus)
• 2003

  Quantification of the relationship between magnetoencephalographic (MEG) and blood oxygenation dependent (BOLD) images of brain function

  Barnes, G. R., Singh, K. D., Fawcett, I., Hadjipapas, A. & Hillebrand, A., 2003, Proceedings of the 2003 IEEE Workshop on Statistical Signal Processing, SSP 2003. IEEE Computer Society, p. 290-292 3 p. 1289401. (IEEE Workshop on Statistical Signal Processing Proceedings; vol. 2003-January).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  2 Citations (Scopus)
• 1990

  Mechanisms underlying methotrexate inactivity in human head and neck cancer xenografts

  Braakhuis, BJM., van Dongen, G., Snow, G. B., Peters, GJ., Leyva, A. & Jansen, G., 1990, In: "Chemistry and Biology of Pteridines". Curtius, H. C., Ghisla, S. & Blau, N. (eds.). Walter De Gruyter, p. 1119-1122 4 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Professional