CCA - Imaging and biomarkers (VUmc)

Research output

Research output per year 1981 2017 2018 2019 2020 2021 2022 2023 2024

• 3085 Article
• 315 Review article
• 216 Meeting Abstract
• 138 Comment/Letter to the editor
• 371 More
  • 101 Chapter
  • 65 Phd-Thesis - Research and graduation internal
  • 64 Letter
  • 41 Editorial
  • 36 Conference contribution
  • 17 Poster
  • 14 Erratum/Corrigendum
  • 7 Book
  • 7 Short survey
  • 4 Report
  • 3 Inaugural speech
  • 3 Abstract
  • 3 Paper
  • 3 Phd-Thesis - Research and graduation external
  • 2 Patent
  • 1 Phd-Thesis - Research internal and graduation external

Research output per year

Research output per year

Search results

• 2024

  Leveraging Ellipsoid Bounding Shapes and Fast R-CNN for Enlarged Perivascular Spaces Detection and Segmentation

  Zabihi, M., Tangwiriyasakul, C., Ingala, S., Lorenzini, L., Camarasa, R., Barkhof, F., de Bruijne, M., Cardoso, M. J. & Sudre, C. H., 2024, Machine Learning in Medical Imaging - 14th International Workshop, MLMI 2023, Held in Conjunction with MICCAI 2023, Proceedings. Cao, X., Ouyang, X., Xu, X., Rekik, I. & Cui, Z. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 14349 LNCS. p. 325-334 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14349 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2023

  A Coupled-Mechanisms Modelling Framework for Neurodegeneration

  He, T., Thompson, E., Schroder, A., Oxtoby, N. P., Abdulaal, A., Barkhof, F. & Alexander, D. C., 2023, Medical Image Computing and Computer Assisted Intervention – MICCAI 2023 - 26th International Conference, Proceedings. Greenspan, H., Madabhushi, A., Mousavi, P., Salcudean, S., Duncan, J., Syeda-Mahmood, T. & Taylor, R. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 14227 LNCS. p. 459-469 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14227 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)

• DeepBrainPrint: A Novel Contrastive Framework for Brain MRI Re-Identification

  Puglisi, L. & The Alzheimer's Disease Neuroimaging Initiative, 2023, Medical Imaging with Deep Learning 2023, MIDL 2023. Oguz, I., Noble, J., Li, X., Styner, M., Baumgartner, C., Rusu, M., Heinmann, T., Kontos, D., Landman, B. & Dawant, B. (eds.). ML Research Press, Vol. 227. p. 716-729 (Proceedings of Machine Learning Research).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Ex-vivo OCT on human bladder tissue after radical cystectomy with a newly designed MEMS based forward looking OCT probe

  Remmelink, M. J., Rip, Y., Bloemen, P. R., van den Elzen, R. M., Oddens, J. R., Nieuwenhuijzen, J. A., van der Voorn, J. P., van Leeuwen, T. G., de Reijke, T. M. & de Bruin, D. M., 2023, Translational Biophotonics: Diagnostics and Therapeutics III. Huang, Z. & Lilge, L. D. (eds.). SPIE, Vol. 12627. 126271Q. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 12627).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2021

  An Automated and High Precision Quantitative Analysis of the ACR Phantom

  Markiewicz, P. J., da Costa-Luis, C., Dickson, J., Barnes, A., Krokos, G., MacKewn, J., Clark, T., Wimberley, C., MacNaught, G., Yaqub, M. M., Gispert, J. D., Hutton, B. F., Marsden, P., Hammers, A., Reader, A. J., Ourselin, S., Herholz, K., Matthews, J. C. & Barkhof, F., 2021, 2021 IEEE Nuclear Science Symposium and Medical Imaging Conference Record, NSS/MIC 2021 and 28th International Symposium on Room-Temperature Semiconductor Detectors, RTSD 2022. Tomita, H. & Nakamura, T. (eds.). Institute of Electrical and Electronics Engineers Inc., (2021 IEEE Nuclear Science Symposium and Medical Imaging Conference Record, NSS/MIC 2021 and 28th International Symposium on Room-Temperature Semiconductor Detectors, RTSD 2022).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Translation of third and second harmonic generation microscopy into the clinic for the assessment of fresh lung tumor tissue

  van Huizen, L. M. G., Daniels, J. M. A., Radonic, T., van Mourik, F., Dickhoff, C., Bahce, I., Annema, J. T. & Groot, M. L., 2021, European Conferences on Biomedical Optics, ECBO 2021. The Optical Society, ETu5A.1. (Optics InfoBase Conference Papers).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Translation of third and second harmonic generation microscopy into the clinic for the assessment of fresh lung tumor tissue

  van Huizen, L. M. G., Daniels, J. M. A., Radonic, T., van Mourik, F., Dickhoff, C., Bahce, I., Annema, J. T. & Groot, M. L., 2021, Translational Biophotonics: Diagnostics and Therapeutics. Huang, Z. & Lilge, L. D. (eds.). SPIE, Vol. 11919. 3 p. 1191910. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2020

  Disentangling human error from the ground truth in segmentation of medical images

  Zhang, L., Tanno, R., Xu, M-C., Jin, C., Jacob, J., Ciccarelli, O., Barkhof, F. & Alexander, D. C., 2020, 34th Conference on Neural Information Processing Systems, NeurIPS 2020. Neural Information Processing Systems Foundation, Vol. 2020-December. (Advances in Neural Information Processing Systems).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  35 Citations (Scopus)

• Learning to segment when experts disagree

  Zhang, L., Tanno, R., Bronik, K., Jin, C., Nachev, P., Barkhof, F., Ciccarelli, O. & Alexander, D. C., 2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 - 23rd International Conference, Proceedings. Martel, A. L., Abolmaesumi, P., Stoyanov, D., Mateus, D., Zuluaga, M. A., Zhou, S. K., Racoceanu, D. & Joskowicz, L. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 12261 LNCS. p. 179-190 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  10 Citations (Scopus)

• Textural Feature Based Segmentation: A Repeatable and Accurate Segmentation Approach for Tumors in PET Images

  Pfaehler, E., Mesotten, L., Kramer, G., Thomeer, M., Vanhove, K., de Jong, J., Adriaensens, P., Hoekstra, O. S. & Boellaard, R., 1 Jan 2020, Medical Image Understanding and Analysis - 24th Annual Conference, MIUA 2020, Proceedings. Papiez, B. W., Namburete, A. I. L., Yaqub, M. & Noble, J. A. (eds.). Springer, p. 3-14 12 p. (Communications in Computer and Information Science; vol. 1248 CCIS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  2 Citations (Scopus)
• 2019

  D273: UTILISING A VALUE-BASED HEALTHCARE APPROACH FOR IMPROVED CARE OF HEAD AND NECK ONCOLOGY PATIENTS, THE AMSTERDAM UNIVERSITY MEDICAL CENTRE (UMC)- VUMC LOCATION EXPERIENCES.

  Voortman, J., 2019, D273: UTILISING A VALUE-BASED HEALTHCARE APPROACH FOR IMPROVED CARE OF HEAD AND NECK ONCOLOGY PATIENTS, THE AMSTERDAM UNIVERSITY MEDICAL CENTRE (UMC)- VUMC LOCATION EXPERIENCES..

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Deep Learning Based Approach to Quantification of PET Tracer Uptake in Small Tumors

  Dal Toso, L., Pfaehler, E., Boellaard, R., Schnabel, J. A. & Marsden, P. K., 1 Jan 2019, Machine Learning for Medical Image Reconstruction - 2nd International Workshop, MLMIR 2019, held in Conjunction with MICCAI 2019, Proceedings. Knoll, F., Maier, A., Rueckert, D. & Ye, J. C. (eds.). Springer, Vol. 11905 LNCS. p. 181-192 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11905 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  Open Access
  1 Citation (Scopus)
• 2018

  A computational network model for the effects of certain types of dementia on social functioning

  Commu, C., Treur, J., Dols, A. & Pijnenburg, Y. A. L., 2018, Computational Collective Intelligence: 10th International Conference, ICCCI 2018, Bristol, UK, September 5-7, 2018, Proceedings, Part I. Nguyen, N. T., Pimenidis, E., Khan, Z. & Trawinski, B. (eds.). Springer/Verlag, Vol. 1. p. 119-133 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11055 LNAI).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  Open Access
  1 Citation (Scopus)

• Dynamic PET Reconstruction Utilizing a Spatiotemporal 4D De-noising Kernel

  Cheng, J-C. K., Bevington, C., Rahmim, A., Klyuzhin, I., Matthews, J., Boellaard, R. & Sossi, V., 2018, 2018 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2018 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 8824452. (2018 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2018 - Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  2 Citations (Scopus)

• Evaluation of HYPR-OSEM Using Experimental Phantom and Clinical Patient Data

  Cheng, J. C. K., Matthews, J., Boellaard, R., Janzen, I., Anton-Rodriguez, J. & Sossi, V., 12 Nov 2018, 2017 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2017 - Conference Proceedings. Institute of Electrical and Electronics Engineers Inc., 8532597. (2017 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2017 - Conference Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2017

  Inter-observer variation in segmenting glioma on MRI before and after resection

  Visser, M., Müller, D., Verburg, N., Eijgelaar, R., Witte, M., Barkhof, F., de Witt Hamer, P. & de Munck, J., 2017, IFMBE Proceedings. Springer Verlag, Vol. 65. p. 161-164 4 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)
• 2016

  Effects of boundary conditions in TOF-MLAA reconstruction for PET/MR

  Cheng, J. C. K., Salomon, A., Yaqub, M. & Boellaard, R., 3 Oct 2016, 2015 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2015. Institute of Electrical and Electronics Engineers Inc., 7582046

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Magnetic field and PET: Does the effect of magnetic field vary with the intrinsic resolution of PET scanners?

  Cheng, J. C., Laforest, R. & Boellaard, R., 10 Mar 2016, 2014 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2014. Institute of Electrical and Electronics Engineers Inc., 7431012

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)
• 2009

  upregulation of nad(p)h:quinone oxidoreductase (NQO1) in glial cells of 6-hydroxydopamine-lesioned substantia nigra in the rat

  Drukarch, B., 2009, advances in behavioral biology, the basal ganglia 9. groenewegen, H. J., voorn, P., berendse, H. W., mulder, A. B. & cools, A. R. (eds.). dordrecht: Springer-Verlag, Vol. 58. p. 411-430 (advances in behavioral biology; no. 58).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic
• 2005

  High resolution PET imaging characteristics of68Ga, 124i and89Zr compared to18F

  De Jong, H. W. A. M., Perk, L., Visser, G. W. M., Boellaard, R., Van Dongen, G. A. M. S. & Lammertsma, A. A., 1 Dec 2005, 2005 IEEE Nuclear Science Symposium Conference Record -Nuclear Science Symposium and Medical Imaging Conference. Vol. 3. p. 1624-1627 4 p. 1596630

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  17 Citations (Scopus)
• 2002

  neuroprotection in parkinson's disease through selective gene induction

  Drukarch, B., 2002, solvay pharmaceuticals conference on parkinson's disease. ronken, E. & van scharrenburg, G. J. M. (eds.). IOS Press, Vol. 1. p. 105-111

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic
• 2001

  nad(p)h:quinone oxidoreductase (NQO1) protects astroglial cells against l-dopa toxicity

  Drukarch, B., 2001, chemical and biological mechanisms in susceptibility to and prevention of environmental disease. dansette, P. M., snyder, R. & delaforge, M. (eds.). Kluwer Academic Publishers, Vol. 500. p. 237-240 (advances in experimental and medical biology vol. 500, biological reactive intermediates 6).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic
• 2000

  Sensitivity analysis for threshold decision making with Bayesian belief networks

  Van Der Gaag, L. C. & Coupé, V. M. H., 2000, AI*IA 99: Advances in Artificial Intelligence - 6th Congress of Italian Association for Artificial Intelligence, Selected Papers. p. 37-48 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 1792 LNAI).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  19 Citations (Scopus)
• 1997

  dopamine receptor subtypes as targets for the pharmacotherapy of parkinson's disease

  Drukarch, B., 1997, advances in pharmacology: catecholamines: bridging basic science with clinical medicine. goldstein, D. (ed.). san diego: Academic Press, Vol. 42. p. 792-795

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic

  6 Citations (Scopus)

• Supporting probability elicitation by sensitivity analysis

  Coupé, V. M. H. & Van Der Gaag, L. C., 1997, Knowledge Acquisition, Modeling and Management - 10th European Workshop, EKAW 1997, Proceedings. Benjamins, R. & Plaza, E. (eds.). Springer Verlag, p. 335-340 6 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 1319).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  5 Citations (Scopus)

• the role of glutathione in the pathogenesis of parkinson's disease

  Drukarch, B., 1997, neurochemistry: cellular, molecular and clinical aspects. teelken, A. W. & korf, J. (eds.). new york: Plenum Press, p. 243-248

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic
• 1993

  dopamine and glutamate receptor subtypes as (potential) targets for the pharmacotherapy of Parkinson's disease

  Drukarch, B., 1993, mental dysfunctions in parkinson's disease. wolters, E. & scheltens, P. (eds.). dordrecht: ICG, p. 19-33

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic
• 1990

  Characterization of receptor-mediated (anti)folate uptake in human CCRF-CEM cells

  Westerhof, G. R., Jansen, G., Kathmann, G. A. M., Schornagel, J. H. & Rijksen, G., 1990, In: "Chemistry and Biology of Pteridines". Curtius, H. C., Ghisla, S. & Blau, N. (eds.). Walter De Gruyter, p. 1284-1287 4 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Professional

• Interaction of N-hydroxy(sulfo)succinimide active esters with the reduced folate/methotrexate transport system from human CCRF-CEM leukemia cells

  Jansen, G., Westerhof, G. R., Kathmann, G. A. M., Schornagel, J. H. & Rijksen, G., 1990, In: "Chemistry and Biology of Pteridines". Curtius, H. C., Ghisla, S. & Blau, N. (eds.). Walter De Gruyter, p. 1272-1275 4 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Professional

• Mechanisms underlying methotrexate inactivity in human head and neck cancer xenografts

  Braakhuis, BJM., van Dongen, G., Snow, G. B., Peters, GJ., Leyva, A. & Jansen, G., 1990, In: "Chemistry and Biology of Pteridines". Curtius, H. C., Ghisla, S. & Blau, N. (eds.). Walter De Gruyter, p. 1119-1122 4 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Professional

• Membrane transport characteristics of the thymidylate synthase inhibitor 2-desamino-2-methyl-N10-propargyl-5,8-dideazafolic acid

  Jansen, G., Schornagel, J. H., Westerhof, G. R., Rijksen, G., Newell, D. R. & Jackman, A. L., 1990, In: "Chemistry and Biology of Pteridines". Curtius, H. C., Gishla, S. & Blau, N. (eds.). Walter De Gruyter, p. 1056-1059 4 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Professional

• Methotrexate (MTX) transport and cytotoxicity of MTX and trimetrexate (TMQ) for human squamous cell carcinoma (SCC) of the head and neck grown at low folate concentrations

  van der Laan, B. F. A. M., Hordijk, G. J., Jansen, G., van Gestel, J. A., Kathmann, G. A. M., Westerhof, G. R., Schornagel, J. H. & Rijksen, G., 1990, In: "Chemistry and Biology of Pteridines". Walter De Gruyter, p. 1127-1130 4 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Professional

• mu-opioid receptor-mediated inhibition of beta-adrenergic sensitive adenylate cyclase in primary cultures of rat neostriatal neurons

  Drukarch, B., 1990, new leads in opioid research, excerpta medica international congress series vol. 914. Excerpta Medica, Vol. 914. p. 253-255

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic

• Purification and characterization of a membrane associated folate binding protein from human CCRF-CEM cells

  Westerhof, G. R., Jansen, G., Kathmann, G. A. M., Schornagel, J. H. & Rijksen, G., 1990, In: "Chemistry and Biology of Pteridines: Pteridines and Folic Acid Derivatives". Curtius, H. C., Ghisla, S. & Blau, N. (eds.). Walter De Gruyter, p. 624-627 4 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Professional

• Tumor cell sensitivity and resistance to folate analogs: the role of carrier- and receptor-mediated transport systems

  Jansen, G. & Schornagel, J. H., 1990, In: "Chemistry and Biology of Pteridines". Curtius, H. C., Ghisla, S. & Blau, N. (eds.). Walter De Gruyter, p. 1247-1252 6 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Professional
• 1986

  Use of CI-920 in the characterization of the methotrexate transport defects in a resistant human leukemic CCRF-CEM cell line

  Jansen, G., Schornagel, J. H., Rijksen, G. & de Gier, J., 1986, In: "Chemistry and Biology of Pteridines". Cooper, B. A. & Whitehead, V. M. (eds.). Walter De Gruyter, p. 543-546 4 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Professional