Epidemiology and Data Science (AMC)

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  • 2023

    Explainable Drug Repurposing in Context via Deep Reinforcement Learning

    Stork, L., Tiddi, I., Spijker, R. & ten Teije, A., 2023, The Semantic Web - 20th International Conference, ESWC 2023, Proceedings. Pesquita, C., Faria, D., Jimenez-Ruiz, E., McCusker, J., Dragoni, M., Dimou, A., Troncy, R. & Hertling, S. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 13870 LNCS. p. 3-20 18 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13870 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  • 2022

    Covered Information Disentanglement: Model Transparency via Unbiased Permutation Importance

    Pereira, J. P. B., Stroes, E. S. G., Zwinderman, A. H. & Levin, E., 30 Jun 2022, Proceedings of the 36th AAAI Conference on Artificial Intelligence, AAAI 2022. Association for the Advancement of Artificial Intelligence, Vol. 36. p. 7984-7992 (Proceedings of the 36th AAAI Conference on Artificial Intelligence, AAAI 2022).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    2 Citations (Scopus)
  • 2021

    Interpretable Models via Pairwise Permutations Algorithm

    Maasland, T., Pereira, J., Bastos, D., de Goffau, M., Nieuwdorp, M., Zwinderman, A. H. & Levin, E., 2021, Machine Learning and Principles and Practice of Knowledge Discovery in Databases - International Workshops of ECML PKDD 2021, Proceedings. Kamp, M., Koprinska, I., Bibal, A., Bouadi, T., Frénay, B., Galárraga, L., Oramas, J., Adilova, L., Krishnamurthy, Y., Kang, B., Largeron, C., Lijffijt, J., Viard, T., Welke, P., Ruocco, M., Aune, E., Gallicchio, C., Schiele, G., Pernkopf, F., Blott, M., Fröning, H., Schindler, G., Guidotti, R., Monreale, A., Rinzivillo, S., Biecek, P., Ntoutsi, E., Pechenizkiy, M., Rosenhahn, B., Buckley, C., Cialfi, D., Lanillos, P., Ramstead, M., Verbelen, T., Ferreira, P. M., Andresini, G., Malerba, D., Medeiros, I., Fournier-Viger, P., Nawaz, M. S., Ventura, S., Sun, M., Zhou, M., Bitetta, V., Bordino, I., Ferretti, A., Gullo, F., Ponti, G., Severini, L., Ribeiro, R., Gama, J., Gavaldà, R., Cooper, L., Ghazaleh, N., Richiardi, J., Roqueiro, D., Saldana Miranda, D., Sechidis, K. & Graça, G. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 1524 CCIS. p. 15-25 (Communications in Computer and Information Science).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    1 Citation (Scopus)
  • 2020

    DeSpin: A prototype system for detecting spin in biomedical publications

    Koroleva, A., Kamath, S., Bossuyt, P. M. M. & Paroubek, P., 2020, BioNLP 2020 - 19th SIGBioMed Workshop on Biomedical Language Processing, Proceedings of the Workshop. Association for Computational Linguistics (ACL), p. 49-59 11 p. (Proceedings of the Annual Meeting of the Association for Computational Linguistics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    1 Citation (Scopus)

  • Manifold mixing for stacked regularization

    Pereira, J., Stroes, E. S. G., Groen, A. K., Zwinderman, A. H. & Levin, E., 2020, Machine Learning and Knowledge Discovery in Databases - International Workshops of ECML PKDD 2019, Proceedings. Cellier, P. & Driessens, K. (eds.). Springer, Vol. 1167 CCIS. p. 444-452 9 p. (Communications in Computer and Information Science; vol. 1167 CCIS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    3 Citations (Scopus)
  • 2019

    A distantly supervised dataset for automated data extraction from diagnostic studies

    Norman, C., Leeflang, M., Spijker, R., Kanoulas, E. & Névéol, A., 2019, SIGBioMed Workshop on Biomedical Natural Language Processing: BioNLP 2019 : Proceedings of the 18th BioNLP Workshop and Shared Task : August 1, 2019, Florence, Italy. Demner-Fushman, D., Cohen, K. B., Ananiadou, S. & Tsujii, J. (eds.). Stroudsburg, PA: The Association for Computational Linguistics, p. 105-114 10 p. (BioNLP 2019 - SIGBioMed Workshop on Biomedical Natural Language Processing, Proceedings of the 18th BioNLP Workshop and Shared Task).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    Open Access
    3 Citations (Scopus)

  • Automating document discovery in the systematic review process: How to use chaff to extract wheat

    Norman, C., Leeflang, M., Zweigenbaum, P. & Névéol, A., 2019, LREC 2018 - 11th International Conference on Language Resources and Evaluation. Isahara, H., Maegaard, B., Piperidis, S., Cieri, C., Declerck, T., Hasida, K., Mazo, H., Choukri, K., Goggi, S., Mariani, J., Moreno, A., Calzolari, N., Odijk, J. & Tokunaga, T. (eds.). European Language Resources Association (ELRA), p. 3681-3687 (LREC 2018 - 11th International Conference on Language Resources and Evaluation).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    2 Citations (Scopus)

  • CLEF 2019 technology assisted reviews in empirical medicine overview

    Kanoulas, E., Li, D., Azzopardi, L. & Spijker, R., 2019, Working Notes of CLEF 2019 - Conference and Labs of the Evaluation Forum: Lugano, Switzerland, September 9-12, 2019. Cappellato, L., Ferro, N., Losada, D. E., Müller, H., Ferro, N., Losada, D. E., Muller, H. & Cappellato, L. (eds.). Aachen: CEUR-WS, Vol. 2380. 31 p. 250. (CEUR Workshop Proceedings; vol. 2380).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    Open Access
    32 Citations (Scopus)

  • CLEF ehealth 2019 evaluation lab

    Kelly, L., Goeuriot, L., Suominen, H., Neves, M., Kanoulas, E., Spijker, R., Azzopardi, L., Li, D., Jimmy, Palotti, J. & Zuccon, G., 2019, Advances in Information Retrieval: 41st European Conference on IR Research, ECIR 2019, Cologne, Germany, April 14-18, 2019 : proceedings. Azzopardi, L., Stein, B., Fuhr, N., Mayr, P., Hauff, C., Hiemstra, D., Hauff, C., Fuhr, N., Azzopardi, L., Hiemstra, D., Mayr, P. & Stein, B. (eds.). Cham: Springer, Vol. 2. p. 267-274 (Lecture Notes in Computer Science; vol. 11438).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    Open Access
    4 Citations (Scopus)

  • Red Alert: Break-Glass Protocol to Access Encrypted Medical Records in the Cloud

    de Oliveira, M. T., Michalas, A., Groot, A. E. D., Marquering, H. A. & Olabarriaga, S. D., 2019, 2019 IEEE International Conference on E-Health Networking, Application and Services, HealthCom 2019. Institute of Electrical and Electronics Engineers Inc., 9009598. (2019 IEEE International Conference on E-Health Networking, Application and Services, HealthCom 2019).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    2 Citations (Scopus)
  • 2018

    Analysis of the term 'big data': Usage in biomedical publications

    van Altena, A. J., Moerland, P. D., Zwinderman, A. H. & Olabarriaga, S. D., 2018, Proceedings - 2017 IEEE International Conference on Big Data, Big Data 2017. Obradovic, Z., Baeza-Yates, R., Kepner, J., Nambiar, R., Wang, C., Toyoda, M., Suzumura, T., Hu, X., Cuzzocrea, A., Tang, J., Zang, H., Nie, J-Y. & Ghosh, R. (eds.). Institute of Electrical and Electronics Engineers Inc., Vol. 2018-January. p. 1253-1258 (Proceedings - 2017 IEEE International Conference on Big Data, Big Data 2017).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    1 Citation (Scopus)

  • LIMSI@CLEF eHealth 2018 Task 2: Technology assisted reviews by stacking active and static learning

    Norman, C., Leeflang, M. & Névéol, A., 2018, CLEF 2018 - Working Notes of CLEF 2018 Conference and Labs of the Evaluation Forum. Ferro, N., Nie, J-Y., Soulier, L. & Cappellato, L. (eds.). CEUR-WS, Vol. 2125. (CEUR Workshop Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    4 Citations (Scopus)
  • 2014

    The effect of aggregating subtype performances depends strongly on the performance measure used

    Tax, D. M. J., Sontrop, H. M. J., Reinders, M. J. T. & Moerland, P. D., 4 Dec 2014, Proceedings - International Conference on Pattern Recognition. Institute of Electrical and Electronics Engineers Inc., p. 3720-3725 6 p. 6977351. (Proceedings - International Conference on Pattern Recognition).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  • 2010

    Subtype specific breast cancer event prediction

    Sontrop, H., Verhaegh, W. F. J., Van Den Ham, R., Reinders, M. J. T. & Moerland, P., 2010, 2010 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2010. 5719684. (2010 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  • 2009

    A sensitivity analysis of microarray feature selection and classification under measurement noise

    Sontrop, H., Van den Ham, R., Moerland, P., Reinders, M. J. T. & Verhaegh, W. F. J., 2009, 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2009. 5174352. (2009 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    1 Citation (Scopus)
  • 2006

    A Distributed Workflow Management System for Automated Medical Image Analysis and Logistics

    Olabarriaga, S. D., Alkemade, J., van Andel, H. G., Nederveen, A. J., Majoie, C. B., den Heeten, G. J., van Straten, M. & Belleman, R. G., 2006, IEEE CMBS, special track on Grids for Biomedical Informatics: Salt Lake City. p. 733-738 6 p. (2006).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    8 Citations (Scopus)

  • Virtual lab for fMRI: Bridging the usability gap

    Olabarriaga, S. D., De Boer, P. T., Maheshwari, K., Belloum, A., Snel, J. G., Nederveen, A. J. & Bouwhuis, M., 2006, e-Science 2006 - Second IEEE International Conference on e-Science and Grid Computing. 4031026. (e-Science 2006 - Second IEEE International Conference on e-Science and Grid Computing).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    17 Citations (Scopus)
  • 1999

    Classification using localized mixtures of experts

    Moerland, P., 1999, IEE Conference Publication. 470 ed. IEE, p. 838-843 6 p. (IEE Conference Publication; vol. 2, no. 470).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    10 Citations (Scopus)

  • Comparison of mixture models for density estimation

    Moerland, P., 1999, IEE Conference Publication. 470 ed. IEE, p. 25-30 6 p. (IEE Conference Publication; vol. 1, no. 470).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    14 Citations (Scopus)
  • 1997

    Handwritten digit recognition with binary optical perceptron

    Saxena, I., Moerland, P., Fiesler, E. & Pourzand, A., 1997, Artificial Neural Networks - ICANN 1997 - 7th International Conference, Proceeedings. Gerstner, W., Germond, A., Hasler, M. & Nicoud, J-D. (eds.). Springer Verlag, p. 1253-1258 6 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 1327).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    1 Citation (Scopus)

  • Mixtures of experts estimate a posteriori probabilities

    Moerland, P., 1997, Artificial Neural Networks - ICANN 1997 - 7th International Conference, Proceeedings. Gerstner, W., Germond, A., Hasler, M. & Nicoud, J-D. (eds.). Springer Verlag, p. 499-504 6 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 1327).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    8 Citations (Scopus)