Medical Microbiology and Infection Prevention (AMC)

Research output

Research output per year 1986 2006 2008 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 2024

• 2785 Article
• 182 Review article
• 135 Comment/Letter to the editor
• 64 Editorial
• 116 More
  • 44 Chapter
  • 36 Phd-Thesis - Research and graduation internal
  • 10 Erratum/Corrigendum
  • 7 Letter
  • 5 Book editing
  • 5 Conference contribution
  • 2 Book
  • 2 Phd-Thesis - Research and graduation external
  • 1 Paper
  • 1 Meeting Abstract
  • 1 Other contribution
  • 1 Patent
  • 1 Preprint

Research output per year

Research output per year

Search results

• 2022

  Biomaterial-Associated Infection: Pathogenesis and Prevention

  Riool, M. & Zaat, S. A. J., 1 Jan 2022, Urinary Stents: Current State and Future Perspectives. Springer International Publishing, p. 245-257 (Urinary Stents: Current State and Future Perspectives).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  Open Access
  1 Citation (Scopus)

• CRISPR-Cas-Based Gene Therapy to Target Viral Infections

  Hussein, M., Berkhout, B. & Herrera-Carrillo, E., 1 Jan 2022, Biotechnologies for Gene Therapy: RNA, CRISPR, Nanobots, and Preclinical Applications. Springer International Publishing, p. 85-125 (Biotechnologies for Gene Therapy: RNA, CRISPR, Nanobots, and Preclinical Applications).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Photochemical Internalization as a New Strategy to Enhance Efficacy of Antimicrobial Agents Against Intracellular Infections

  Zhang, X., de Boer, L. & Zaat, S. A. J., 2022, Methods in Molecular Biology. Humana Press Inc., Vol. 2451. p. 671-689 19 p. (Methods in Molecular Biology; vol. 2451).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
• 2021

  Design and evaluation of agoshRNAs with 3′-terminal hdv ribozymes to enhance the silencing activity

  Berkhout, B. & Herrera-Carrillo, E., 2021, Methods in Molecular Biology. Humana Press Inc., Vol. 2167. p. 225-252 28 p. (Methods in Molecular Biology; vol. 2167).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
  3 Citations (Scopus)

• Design and evaluation of guide RNA transcripts with a 3′-terminal HDV ribozyme to enhance CRISPR-based gene inactivation

  Berkhout, B., Gao, Z. & Herrera-Carrillo, E., 2021, Methods in Molecular Biology. Humana Press Inc., Vol. 2167. p. 205-224 20 p. (Methods in Molecular Biology; vol. 2167).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
  3 Citations (Scopus)
• 2019

  Multilocus Sequence Typing (MLST) of Chlamydiales

  Jelocnik, M., Polkinghorne, A. & Pannekoek, Y., 2019, Methods in Molecular Biology. Humana Press Inc., Vol. 2042. p. 69-86 (Methods in Molecular Biology).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
  10 Citations (Scopus)
• 2016

  Human parechoviruses

  Benschop, K., Molenkamp, R. & Wolthers, K., 19 Apr 2016, Molecular Detection of Human Viral Pathogens. CRC Press, p. 53-64 12 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
• 2015

  HIV infection and adipose tissue resident stem cells: their involvement in pathology and treatment

  Roy, U. & Berkhout, B., 2015, Stem Cells and Cancer Stem Cells, Therapeutic applications in disease and injury, Volume 13. Hayat, M. A. (ed.). Dordrecht: Springer Netherlands, p. 21-34 (Stem Cells and Cancer Stem Cells; no. 13).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
• 2014

  Gene Silencing Methods Using Vector-Encoded siRNAs or miRNAs

  Liu, Y. P. & Berkhout, B., 2014, Handbook of RNA Biochemistry (2nd rev. and enl. ed.). Hartmann, R. K., Bindereif, A., Schön, A. & Westhof, E. (eds.). S.l.: Wiley-VCH, p. 1221-1242

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
  1 Citation (Scopus)

• Multilocus sequence typing (MLST): Markers for the traceability of pathogenic Leptospira strains

  Ahmed, A., Ferreira, A. S. & Hartskeerl, R. A., 15 Nov 2014, Veterinary Infection Biology: Molecular Diagnostics and High-Throughput Strategies. Springer New York, p. 349-359 11 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• The Regulatory Small RNAs of Neisseria

  Pannekoek, Y., Speijer, D. & van der Ende, A., 2014, Pathogenic Neisseria: Genomics, Molecular Biology and Disease Intervention. Davies, J. K. & Kahler, C. M. (eds.). S.l.: Caister Academic Press, p. 41-58

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
• 2013

  Biomarkers for lysosomal storage disorders

  Aerts, J. M. F. G., Ferraz, M. J., Boot, R. G., Van Breemen, M. J., Dekker, N., Kramer, G., Hollak, C. E. M., Maas, M., Linthorst, G. E., Smid, B., Rombach, S. M., Van Dussen, L., Poorthuis, B. & Groener, J. E. M., Jan 2013, Neurochemistry of Metabolic Diseases: Lysosomal Storage Diseases, Phenylketonuria and Canavan Disease. NOVA Science publishers, Inc., p. 169-202 34 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Preventive measures against transcutaneous device infections

  Kwakman, P. H. S. & Zaat, S. A. J., 2013, Biomaterials associated infection : Immunological aspects and antimicrobial strategies. Moriarty, T. F., Zaat, S. A. J. & Busscher, H. J. (eds.). New York: Springer, p. 229-248

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  3 Citations (Scopus)

• RNAi as antiviral therapy: the HIV-1 case

  Berkhout, B. & Eekels, J. J. M., 2013, RNA Interference from Biology to Therapeutics. Howard, K. A. (ed.). New York: Springer, p. 221-242 (Advances in Delivery Science and Technology; no. XV).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Structure–Function Relationships of Antimicrobial Chemokines

  Arias, M., Zaat, S. A. J. & Vogel, H. J., 2013, Antimicrobial Peptides and Innate Immunity. Hiemstra, P. S. & Zaat, S. A. J. (eds.). Basel: Springer, p. 183-216 (Progress in Inflammation Research).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  2 Citations (Scopus)

• Tissue colonization in biomaterial-associated infection

  Zaat, S. A. J., 2013, Biomaterials associated infection : Immunological aspects and antimicrobial strategies. Moriarty, T. F., Zaat, S. A. J. & Busscher, H. J. (eds.). New York: Springer, p. 175-207

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  11 Citations (Scopus)
• 2012

  Biomarkers for Lysosomal Storage Disorders

  Aerts, J. M. F. G., Ferraz, M. J., Boot, R. G., van Breemen, M. J., Dekker, N., Kramer, G., Hollak, C. E. M., Maas, M., Linthorst, G. E., Smid, B., Rombach, S. M., van Dussen, L., Poorthuis, B. & Groener, J. E. M., 2012, Neurochemistry of Metabolic Diseases: Lysosomal Storage Diseases, Phenylketonuria and Canavan Disease. Surendran, S. (ed.). Hauppage, New York: Nova Science Publishers, p. 169-203 (Metabolic Diseases - Laboratory and Clinical Research).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Human Parechoviruses, New Players in the Pathogenesis of Viral Meningitis

  Benschop, K., Wildenbeest, J., Pajkrt, D. & Wolthers, K., 2012, Meningitis. Wireko-Brobby, G. (ed.). S.l.: InTech, p. 145-162

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
• 2011

  Antiviral RNAi, how to silence viruses

  von Eije, K. J. & Berkhout, B., 2011, Antiviral Drug Strategies. de Clercq, E. (ed.). Weinheim: Wiley-VCH Verlag, p. 329-349 (Methods and principles in medicinal chemistry; no. 50).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Clinical relevance of HIV-1 superinfection

  Hoogmoed, D., Cornelissen, M. & van der Kuyl, A. C., 2011, HIV-host interactions. Chang, T. L. (ed.). Rijeka, Croatia: InTech, p. 79-96

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• HIV/AIDS: the possibilities of an RNAi-based gene therapy

  Berkhout, B., 2011, Fundamental and Translational Research on HIV/AIDS: Global Perspectives. Bandivdekar, A. H. & Puri, C. P. (eds.). Mumbai: National Institute for Research in Reproductive Health, p. 1-19

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Toward a durable treatment of HIV-1 infection using

  Eekels, J. J. M. & Berkhout, B., 2011, Cellular RNA interference mechanisms. Grimm, D. (ed.). London: Academic Press, p. 141-163 (Progress in Molecular Biology and Translational Science; no. 102).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  15 Citations (Scopus)
• 2010

  HIV-1 Interactions with Small RNA Induced Silencing Mechanisms

  Haasnoot, J. & Berkhout, B., 2010, Recent Advances in Human Retroviruses: Principles of Replication and Pathogenesis. Lever, A. M. L., Jeang, K-T. & Berkhout, B. (eds.). Singapore: World Scientific Publishing Co. Pte. Ltd., p. 471-489

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Hiv-onderzoek na 25 jaar

  Berkhout, B., 2010, Handboek Hiv en psychische klachten. Schadé, A., Boenink, A. D. & Danner, S. A. (eds.). Utrecht: De Tijdstroom, p. 45-53

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Professional

• RNAi Gene Therapy to Control HIV-1 Infection

  Berkhout, B. & ter Brake, O., 2010, RNA Interference and Viruses: Current Innovations and Future Trends. Martínez, M. A. (ed.). Norfolk: Caister Academic Press, p. 127-142

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• RNAi treatment of HIV-1 infection

  Von Eije, K. J. & Berkhout, B., 2010, RNA Technologies and Their Applications. Erdmann, V. A. & Barciszewski, J. (eds.). Berlin: Springer-Verlag, p. 191-208

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• RNAi Treatment of HIV-1 Infection

  von Eije, K. J. & Berkhout, B., 2010, RNA Technologies. Springer Science and Business Media Deutschland GmbH, p. 191-208 (RNA Technologies).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Virus-encoded Suppressors of RNA Silencing and the Role of Cellular miRNAs in Mammalian Antiviral Immune Responses

  Haasnoot, J. & Berkhout, B., 2010, RNA Interference and Viruses: Current Innovations and Future Trends. Martínez, M. A. (ed.). Norfolk: Caister Academic Press, p. 67-88

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
• 2009

  Analysis of gene family expression in African endemic- and AIDS-related Kaposi's sarcoma

  Van Der Kuyl, A. C., Van Den Burg, R., Zorgdrager, F., Lebbé, C. & Cornelissen, M., 2009, Viral Gene Expression Regulation. Nova Science Publishers Inc., p. 237-266 30 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• In Vivo Modulation of gene expression by Lentiviral Transduction in "Human Immune System" Rag2-/-yc-/-Mice

  van Lent, A. U. G., Centlivre, M., Nagasawa, M., Karrich, J., Pouw, S. M., Weijer, K., Spits, H. & Blom, B., 2009, Dendritic Cell Protocols. Naik, S. H. (ed.). S.l.: Humana Press, p. 87-115 (Methods in Molecular Biology; no. 595).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
• 2008

  Development of an RNAi-based gene therapy agains HIV-1

  ter Brake, O. & Berkhout, B., 2008, Therapeutic Oligonucleotides. Kurreck, J. (ed.). Stuttgart: RSCPublishing, p. 296-311 (RSC Biomolecular Sciences).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• New Human Parechoviruses: six and counting

  Benschop, K., Stanway, G. & Wolthers, K. C., 2008, Emerging Infections 8. Scheld, W. M., Hammer, S. M. & Hughes, J. M. (eds.). S.l.: ASM, p. 53-74

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Parasites

  van Gool, T., 2008, Infections Control in the Hospital. Wenzel, R., Baerman, G., Brewer, T. & Butzler, J. P. (eds.). S.l.: s.n.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Parasitologie

  van Gool, T., 2008, Werkboek Infectieziekten bij kinderen. van Furth, A. M., Hartwig, N. G. & Wolfs, T. F. (eds.). S.l.: VU University Press

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Professional
• 2006

  Attachment factor and receptor engagement of SARS coronavirus and human coronavirus NL63

  Hofman, H., Marzi, A., Gramberg, T., Geier, M., Pyrc, K., van der Hoek, L., Berkhout, B. & Pöhlmann, S., 2006, The Nidoviruses: toward control of SARS and other nidovirus diseases. Perlman, S. & Holmes, K. V. (eds.). S.l.: Springer, p. 219-227

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  7 Citations (Scopus)

• Human angiotensin-converting enzyme 2 (ACE2) is a receptor for human respiratory coronavirus NL63

  Smith, M. K., Tusell, S., Travanty, E. A., Berkhout, B., van der Hoek, L. & Holmes, K. V., 2006, The Nidoviruses: toward control of SARS and other nidovirus diseases. Perlman, S. & Holmes, K. V. (eds.). S.l.: Springer, p. 285-288

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  32 Citations (Scopus)

• Human coronavirus NL63 infection is associated with group

  van der Hoek, L., Sure, K., Ihorst, G., Stang, A., Pyrc, K., Jebbink, M. F., Petersen, G., Forster, J., Berkhout, B. & Überla, K., 2006, The Nidoviruses: toward control of SARS and other nidovirus diseases. Perlman, S. & Holmes, K. V. (eds.). S.l.: Springer, p. 485-491

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  28 Citations (Scopus)

• Interaction between the spike protein of human coronavirus NL63 and its cellular receptor ACE2

  Pöhlmann, S., Gramberg, T., Wegele, A., Pyrc, K., van der Hoek, L., Berkhout, B. & Hofmann, H., 2006, The Nidoviruses: toward control of SARS and other nidovirus diseases. Perlman, S. & Holmes, K. V. (eds.). S.l.: Springer, Vol. 581. p. 281-284 (Advances in experimental medicine and biology).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
  17 Citations (Scopus)

• Nonstructural proteins of human coronavirus NL63

  Piotrowski, Y., van der Hoek, L., Pyrc, K., Berkhout, B., Moll, R. & Hilgenfeld, R., 2006, The Nidoviruses: toward control of SARS and other nidovirus diseases. Perlman, S. & Holmes, K. V. (eds.). S.l.: Springer, p. 97-100

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  1 Citation (Scopus)
• 2005

  Determination of cell tropism of HIV-1

  Kootstra, N. A. & Schuitemaker, H., 2005, Human retrovirus protocols: virology and molecular biology. Zhu, T. (ed.). Totowa, NJ: Humana Press Inc., p. 317-325 (Methods in molecular biology; no. 304).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  6 Citations (Scopus)

• Determination of co-receptor usage of HIV-1

  Schuitemaker, H. & Kootstra, N. A., 2005, Human retrovirus protocols: virology and molecular biology. Zhu, T. (ed.). Totowa, NJ: Humana Press Inc., p. 327-332 (Methods in molecular biology; no. 304).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  10 Citations (Scopus)

• Isolations, propagation, and titration of human immunodeficiency virus type 1 from peripheral blood of infected individuals

  Schuitemaker, H. & Kootstra, N. A., 2005, Human retrovirus protocols: virology and molecular biology. Zhu, T. (ed.). Totowa, NJ: Humana Press Inc., p. 17-24 (Methods in molecular biology; no. 304).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  10 Citations (Scopus)

• Molecular characterization of human coronavirus NL63

  Pyrc, K., Berkhout, B. & van der Hoek, L., 2005, Recent Res Devel Infection & Immunity. Kerala. India: Transworld Research Network

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
• 2004

  Infecties en antibioticaresistentie

  van der Ende, A., 2004, Het medisch jaar 2004. Keeman, J. N., de Leeuw, P. W., Mazel, J. A. & Zitman, F. G. (eds.). Houten: Bohn Stafleu Van Loghum, p. 133-141

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Professional