Elena Herrera Carrillo

Research output

Research output per year 2008 2015 2017 2019 2022 2023 2023

• 37 Article
• 5 Review article
• 3 Chapter

Research output per year

Research output per year

Search results

• 2023

  AAV vectors displaying bispecific DARPins enable dual-control targeted gene delivery

  Theuerkauf, S. A., Herrera-Carrillo, E., John, F., Zinser, L. J., Molina, M. A., Riechert, V., Thalheimer, F. B., Börner, K., Grimm, D., Chlanda, P., Berkhout, B. & Buchholz, C. J., 1 Dec 2023, In: Biomaterials. 303, 122399.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• CRISPR-Cas12b enables a highly efficient attack on HIV proviral DNA in T cell cultures

  Fan, M., Bao, Y., Berkhout, B. & Herrera-Carrillo, E., 1 Sept 2023, In: Biomedicine and Pharmacotherapy. 165, 115046.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Efficient CRISPR-Cas13d-Based Antiviral Strategy to Combat SARS-CoV-2

  Hussein, M., Andrade Dos Ramos, Z., Vink, M. A., Kroon, P., Yu, Z., Enjuanes, L., Zuñiga, S., Berkhout, B. & Herrera-Carrillo, E., 6 Mar 2023, In: Viruses. 15, 3, 686.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  2 Citations (Scopus)

• FcγRIIA-specific DARPins as novel tools in blood cell analysis and platelet aggregation

  Riechert, V., Hein, S., Visser, M., Zimmermann, M., Wesche, J., Adams, P. A., Theuerkauf, S. A., Jamali, A., Wangorsch, A., Reuter, A., Pasternak, A. O., Hartmann, J., Greinacher, A., Herrera-Carrillo, E., Berkhout, B., Cichutek, K. & Buchholz, C. J., 1 Jun 2023, In: Journal of Biological Chemistry. 299, 6, 104743.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  2 Citations (Scopus)

• In-house ELISA protocols for capsid p24 detection of diverse HIV isolates

  Molina, M. A., Vink, M., Berkhout, B. & Herrera-Carrillo, E., 1 Dec 2023, In: Virology journal. 20, 1, 269.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  1 Citation (Scopus)
• 2022

  A combinatorial CRISPR-Cas12a attack on HIV DNA

  Fan, M., Berkhout, B. & Herrera-Carrillo, E., 9 Jun 2022, In: Molecular Therapy - Methods and Clinical Development. 25, p. 43-51 9 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  10 Citations (Scopus)

• In Silico Prediction and Selection of Target Sequences in the SARS-CoV-2 RNA Genome for an Antiviral Attack

  Hussein, M., Dos Ramos, Z. A., Berkhout, B. & Herrera-Carrillo, E., 1 Feb 2022, In: Viruses. 14, 2, 385.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  3 Citations (Scopus)
• 2021

  Engineered miniature H1 promoters with dedicated RNA polymerase II or III activity

  Gao, Z., van der Velden, Y. U., Fan, M., van der Linden, C. A., Vink, M., Herrera-Carrillo, E. & Berkhout, B., 1 Jan 2021, In: Journal of Biological Chemistry. 296, 100026.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  3 Citations (Scopus)
• 2020

  CRISPR therapy towards an HIV cure

  Herrera-Carrillo, E., Gao, Z. & Berkhout, B., 1 May 2020, In: Briefings in functional genomics. 19, 3, p. 201-208 8 p.

  Research output: Contribution to journal › Article › Academic › peer-review
  20 Citations (Scopus)

• Extinction of all infectious HIV in cell culture by the CRISPR-Cas12a system with only a single crRNA

  Gao, Z., Fan, M., Das, A. T., Herrera-Carrillo, E. & Berkhout, B., 4 Jun 2020, In: Nucleic Acids Research. 48, 10, p. 5527-5539 13 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  53 Citations (Scopus)
• 2019

  A Single H1 Promoter Can Drive Both Guide RNA and Endonuclease Expression in the CRISPR-Cas9 System

  Gao, Z., Herrera-Carrillo, E. & Berkhout, B., 2019, In: Molecular Therapy. Nucleic Acids. 14, p. 32-40

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  24 Citations (Scopus)

• Boosting AgoshRNA activity by optimized 5’-terminal nucleotide selection

  Gao, Z., Berkhout, B. & Herrera-Carrillo, E., Jul 2019, In: RNA biology. 16, 7, p. 890-898

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  2 Citations (Scopus)

• Influence of a 3′ Terminal Ribozyme on AgoshRNA Biogenesis and Activity

  Herrera-Carrillo, E., Gao, Z. & Berkhout, B., 2019, In: Molecular Therapy. Nucleic Acids. 16, p. 452-462

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  4 Citations (Scopus)

• The impact of HIV-1 genetic diversity on CRISPR-Cas9 antiviral activity and viral escape

  Darcis, G., Binda, C. S., Klaver, B., Herrera-Carrillo, E., Berkhout, B. & Das, A. T., 2019, In: Viruses. 11, 3, 255.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  30 Citations (Scopus)
• 2018

  Delineation of the Exact Transcription Termination Signal for Type 3 Polymerase III

  Gao, Z., Herrera-Carrillo, E. & Berkhout, B., 2018, In: Molecular Therapy. Nucleic Acids. 10, p. 36-44

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  50 Citations (Scopus)

• Improvement of the CRISPR-Cpf1 system with ribozyme-processed crRNA

  Gao, Z., Herrera-Carrillo, E. & Berkhout, B., 2018, In: RNA biology. 15, 12, p. 1458-1497

  Research output: Contribution to journal › Article › Academic › peer-review
  28 Citations (Scopus)

• RNA Polymerase II Activity of Type 3 Pol III Promoters

  Gao, Z., Herrera-Carrillo, E. & Berkhout, B., 2018, In: Molecular Therapy. Nucleic Acids. 12, p. 135-145

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  29 Citations (Scopus)
• 2017

  Biological or pharmacological activation of protein kinase C alpha constrains hepatitis E virus replication

  Wang, W., Wang, Y., Debing, Y., Zhou, X., Yin, Y., Xu, L., Herrera Carrillo, E., Brandsma, J. H., Poot, R. A., Berkhout, B., Neyts, J., Peppelenbosch, M. P. & Pan, Q., 2017, In: Antiviral Research. 140, p. 1-12

  Research output: Contribution to journal › Article › Academic › peer-review
  11 Citations (Scopus)

• Dicer-independent processing of small RNA duplexes: mechanistic insights and applications

  Herrera-Carrillo, E. & Berkhout, B., 2017, In: Nucleic Acids Research. 45, 18, p. 10369-10379

  Research output: Contribution to journal › Article › Academic › peer-review
  57 Citations (Scopus)

• Influence of the loop size and nucleotide composition on AgoshRNA biogenesis and activity

  Herrera-Carrillo, E., Harwig, A. & Berkhout, B., 2017, In: RNA biology. 14, 11, p. 1559-1569

  Research output: Contribution to journal › Article › Academic › peer-review
  12 Citations (Scopus)

• Mutation of nucleotides around the +1 position of type 3 polymerase III promoters: The effect on transcriptional activity and start site usage

  Gao, Z., Harwig, A., Berkhout, B. & Herrera-Carrillo, E., 2017, In: Transcription. 8, 5, p. 275-287

  Research output: Contribution to journal › Article › Academic › peer-review
  33 Citations (Scopus)

• Novel AgoshRNA molecules for silencing of the CCR5 co-receptor for HIV-1 infection

  Herrera-Carrillo, E. & Berkhout, B., 2017, In: PLOS ONE. 12, 5, p. e0177935

  Research output: Contribution to journal › Article › Academic › peer-review
  16 Citations (Scopus)

• Silencing of HIV-1 by AgoshRNA molecules

  Herrera-Carrillo, E., Harwig, A. & Berkhout, B., 2017, In: Gene therapy. 24, 8, p. 453-461

  Research output: Contribution to journal › Article › Academic › peer-review
  12 Citations (Scopus)

• The influence of the 5΄-terminal nucleotide on AgoshRNA activity and biogenesis: importance of the polymerase III transcription initiation site

  Herrera-Carrillo, E., Gao, Z-L., Harwig, A., Heemskerk, M. T. & Berkhout, B., 2017, In: Nucleic Acids Research. 45, 7, p. 4036-4050

  Research output: Contribution to journal › Article › Academic › peer-review
  18 Citations (Scopus)
• 2016

  Attacking HIV-1 RNA versus DNA by sequence-specific approaches: RNAi versus CRISPR-Cas

  Herrera-Carrillo, E. & Berkhout, B., 2016, In: Biochemical Society Transactions. 44, 5, p. 1355-1365

  Research output: Contribution to journal › Article › Academic › peer-review
  17 Citations (Scopus)
• 2015

  Deep Sequence Analysis of AgoshRNA Processing Reveals 3' A Addition and Trimming

  Harwig, A., Herrera-Carrillo, E., Jongejan, A., van Kampen, A. H. C. & Berkhout, B., 2015, In: Molecular Therapy. Nucleic Acids. 4, p. e247 8 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  12 Citations (Scopus)

• Gene Therapy Strategies to Block HIV-1 Replication by RNA Interference

  Herrera-Carrillo, E. & Berkhout, B., 2015, In: Advances in experimental medicine and biology. 848, p. 71-95

  Research output: Contribution to journal › Article › Academic › peer-review
  11 Citations (Scopus)

• Mechanistic insights on the Dicer-independent AGO2-mediated processing of AgoshRNAs

  Liu, Y. P., Karg, M., Harwig, A., Herrera-Carrillo, E., Jongejan, A., van Kampen, A. & Berkhout, B., 2015, In: RNA biology. 12, 1, p. 92-100

  Research output: Contribution to journal › Article › Academic › peer-review
  19 Citations (Scopus)

• The impact of HIV-1 genetic diversity on the efficacy of a combinatorial RNAi-based gene therapy

  Herrera-Carrillo, E. & Berkhout, B., 2015, In: Gene therapy. 22, 6, p. 485-495

  Research output: Contribution to journal › Article › Academic › peer-review
  22 Citations (Scopus)

• Toward optimization of AgoshRNA molecules that use a non-canonical RNAi pathway: variations in the top and bottom base pairs

  Herrera-Carrillo, E., Harwig, A. & Berkhout, B., 2015, In: RNA biology. 12, 4, p. 447-456

  Research output: Contribution to journal › Article › Academic › peer-review
  14 Citations (Scopus)

• Towards Antiviral shRNAs Based on the AgoshRNA Design

  Liu, Y. P., Karg, M., Herrera-Carrillo, E. & Berkhout, B., 2015, In: PLOS ONE. 10, 6, p. e0128618

  Research output: Contribution to journal › Article › Academic › peer-review
  9 Citations (Scopus)
• 2014

  Probing the shRNA characteristics that hinder Dicer recognition and consequently allow Ago-mediated processing and AgoshRNA activity

  Herrera-Carrillo, E., Harwig, A., Liu, Y. P. & Berkhout, B., 2014, In: RNA (New York, N.Y.). 20, 9, p. 1410-1418

  Research output: Contribution to journal › Article › Academic › peer-review
  30 Citations (Scopus)

• The impact of unprotected T cells in RNAi-based gene therapy for HIV-AIDS

  Herrera-Carrillo, E., Liu, Y. P. & Berkhout, B., 2014, In: Molecular therapy. 22, 3, p. 596-606

  Research output: Contribution to journal › Article › Academic › peer-review
  17 Citations (Scopus)

• The search for a T cell line for testing novel antiviral strategies against HIV-1 isolates of diverse receptor tropism and subtype origin

  Herrera-Carrillo, E., Paxton, W. A. & Berkhout, B., 2014, In: Journal of virological methods. 203, p. 88-96

  Research output: Contribution to journal › Article › Academic › peer-review
  8 Citations (Scopus)
• 2010

  Effect of Synthetic Peptides Belonging to E2 Envelope Protein of GB Virus C on Human Immunodeficiency Virus Type 1 Infection

  Herrera, E., Tenckhoff, S., Gómara, M. J., Galatola, R., Bleda, M. J., Gil, C., Ercilla, G., Gatell, J. M., Tillmann, H. L. & Haro, I., 2010, In: Journal of Medicinal Chemistry. 53, 16, p. 6054-6063

  Research output: Contribution to journal › Article › Academic › peer-review
  44 Citations (Scopus)
• 2009

  Synthetic Peptides of Hepatitis G Virus (GBV-C/HGV) in the Selection of Putative Peptide Inhibitors of the HIV-1 Fusion Peptide

  Herrera, E., Gomara, M. J., Mazzini, S., Ragg, E. & Haro, I., 2009, In: journal of physical chemistry. B, Condensed matter, materials, surfaces, interfaces & biophysical. 113, 20, p. 7383-7391

  Research output: Contribution to journal › Article › Academic › peer-review
  23 Citations (Scopus)
• 2008

  Liposome destabilization induced by synthetic lipopeptides corresponding to envelope and non-structural domains of GBV-C/HGV virus Conformational requirements for leakage

  Fernández-Vidal, M., Rojo, N., Herrera, E., Gómara, M. J. & Haro, I., 2008, In: Biophysical chemistry. 132, 1, p. 55-63

  Research output: Contribution to journal › Article › Academic › peer-review
  5 Citations (Scopus)