Projects per year
Personal profile
Research interests
My research is focused on the interactions between human hosts and the respiratory microbiota in the context of respiratory disease. The microbial ecosystem of the human respiratory tract has just begun to be investigated using the latest deep-sequencing techniques. It might reveal previously unknown relationships between our commensal microbes and the development of acute respiratory infections.
As the senior scientist of the European PREPARE project (http://www.prepare-europe.eu/) within the AMC, I conduct and supervise investigations on virus/bacteria interactions in in-vitro models, respiratory microbiota in patients cohorts, respiratory microbiota in human test subjects and analysis of human response during respiratory infection.
specialisation
Human-related microbiota
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Projects
- 2 Active
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Schultsz C.: Global Health and Medical Microbiology
Aderibigbe, S., van Hattem, J., Janes, V., Nguyen, V., Sugianli, A., Willemse, N., Schultsz, C., Matamoros, S., Ondoa, P. & Brals, D.
1/01/2013 → …
Project: Research
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de Jong M.D.: Emerging Pathogens
de Jong, M., Mens, P., Molenkamp, R., Schinkel, C., Eggink, D., Hofstra, J., Koel, B., Matamoros, S., de Haan, K., Balraadjsing, P., Bruning, A., Cristella, C., Ginting, F., van Hattem, J., Hodiamont, C., Ho, K., Huis in 't Veld, R., Janes, V., Karelehto, S., Merat, S., Nguyen, V., Omardien, S., Pawestri, H., Riool, M., van Someren Greve, F., Sugianli, A., Welkers, M., Willemse, N., Zhang, X. & Cristello, C.
1/01/2013 → …
Project: Research
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A comparison of five Illumina, Ion Torrent, and nanopore sequencing technology-based approaches for whole genome sequencing of SARS-CoV-2
Carbo, E. C., Mourik, K., Boers, S. A., Munnink, B. O., Nieuwenhuijse, D., Jonges, M., Welkers, M. R. A., Matamoros, S., van Harinxma thoe Slooten, J., Kraakman, M. E. M., Karelioti, E., van der Meer, D., Veldkamp, K. E., Kroes, A. C. M., Sidorov, I. & de Vries, J. J. C., Jun 2023, In: European Journal of Clinical Microbiology and Infectious Diseases. 42, 6, p. 701-713 13 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access4 Citations (Scopus) -
Genome-wide association reveals host-specific genomic traits in Escherichia coli
Tiwari, S. K., Putten, B. C. L. V. D., Fuchs, T. M., Vinh, T. N., Bootsma, M., Oldenkamp, R., Ragione, R. L., Matamoros, S., Hoa, N. T., Berens, C., Leng, J., Álvarez, J., Ferrandis-Vila, M., Ritchie, J. M., Fruth, A., Schwarz, S., Domínguez, L., Ugarte-Ruiz, M., Bethe, A., Huber, C., & 9 others, 11 Apr 2023, In: BMC Biology. 21, 1, 76.Research output: Contribution to journal › Article › Academic › peer-review
Open Access5 Citations (Scopus) -
Presence of Burkholderia pseudomallei in Soil, Nigeria, 2019
Savelkoel, J., Oladele, R. O., Ojide, C. K., Peters, R. F., Notermans, D. W., Makinwa, J. O., de Vries, M. C., Sunter, M. A. E., Matamoros, S. B., Abdullahi, N., Unigwe, U. S., Akanmu, A. S., Wiersinga, W. J. & Birnie, E., 1 May 2023, In: Emerging infectious diseases. 29, 5, p. 1073-1075 3 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
Comparison of fast Fourier transform infrared spectroscopy biotyping with whole genome sequencing-based genotyping in common nosocomial pathogens
Teng, A. S. J., Habermehl, P. E., van Houdt, R., de Jong, M. D., van Mansfeld, R., Matamoros, S. B. P. F., Spijkerman, I. J. B., van Meer, M. P. A. & Visser, C. E., Oct 2022, In: Analytical and bioanalytical chemistry. 414, 24, p. 7179-7189 11 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access6 Citations (Scopus) -
Metagenomic DNA sequencing for semi-quantitative pathogen detection from urine: a prospective, laboratory-based, proof-of-concept study
Janes, V. A., Matamoros, S. B., Munk, P., Clausen, P. T. L. C., Koekkoek, S. M., Koster, L. A. M., Jakobs, M. E., de Wever, B., Visser, C. E., Aarestrup, F. M., Lund, O., de Jong, M. D., Bossuyt, P. M. M., Mende, D. R. & Schultsz, C., 1 Aug 2022, In: The Lancet. Microbe. 3, 8, p. e588-e597Research output: Contribution to journal › Article › Academic › peer-review
Open Access7 Citations (Scopus)