Abstract
Original language | English |
---|---|
Pages (from-to) | 1786-1794 |
Number of pages | 9 |
Journal | Nature Genetics |
Volume | 54 |
Issue number | 12 |
Early online date | 2022 |
DOIs | |
Publication status | Published - 1 Dec 2022 |
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In: Nature Genetics, Vol. 54, No. 12, 01.12.2022, p. 1786-1794.
Research output: Contribution to journal › Article › Academic › peer-review
TY - JOUR
T1 - Exome sequencing identifies rare damaging variants in ATP8B4 and ABCA1 as risk factors for Alzheimer’s disease
AU - Holstege, H.
AU - Hulsman, M.
AU - Charbonnier, C.
AU - Grenier-Boley, B.
AU - Quenez, O.
AU - Grozeva, D.
AU - van Rooij, J.G.J.
AU - Sims, R.
AU - Ahmad, S.
AU - Amin, N.
AU - Norsworthy, P.J.
AU - Dols-Icardo, O.
AU - Hummerich, H.
AU - Kawalia, A.
AU - Amouyel, P.
AU - Beecham, G.W.
AU - Berr, C.
AU - Bis, J.C.
AU - Boland, A.
AU - Bossù, P.
AU - Bouwman, F.
AU - Bras, J.
AU - Campion, D.
AU - Cochran, J.N.
AU - Daniele, A.
AU - Dartigues, J.-F.
AU - Debette, S.
AU - Deleuze, J.-F.
AU - Denning, N.
AU - DeStefano, A.L.
AU - Farrer, L.A.
AU - Fernández, M.V.
AU - Fox, N.C.
AU - Galimberti, D.
AU - Genin, E.
AU - Gille, J.J.P.
AU - Le Guen, Y.
AU - Guerreiro, R.
AU - Haines, J.L.
AU - Holmes, C.
AU - Ikram, M.A.
AU - Ikram, M.K.
AU - Jansen, I.E.
AU - Kraaij, R.
AU - Lathrop, M.
AU - Lemstra, A.W.
AU - Lleó, A.
AU - Luckcuck, L.
AU - Mannens, M.M.A.M.
AU - Marshall, R.
AU - Martin, E.R.
AU - Masullo, C.
AU - Mayeux, R.
AU - Mecocci, P.
AU - Meggy, A.
AU - Mol, M.O.
AU - Morgan, K.
AU - Myers, R.M.
AU - Nacmias, B.
AU - Naj, A.C.
AU - Napolioni, V.
AU - Pasquier, F.
AU - Pastor, P.
AU - Pericak-Vance, M.A.
AU - Raybould, R.
AU - Redon, R.
AU - Reinders, M.J.T.
AU - Richard, A.-C.
AU - Riedel-Heller, S.G.
AU - Rivadeneira, F.
AU - Rousseau, S.
AU - Ryan, N.S.
AU - Saad, S.
AU - Sanchez-Juan, P.
AU - Schellenberg, G.D.
AU - Scheltens, P.
AU - Schott, J.M.
AU - Seripa, D.
AU - Seshadri, S.
AU - Sie, D.
AU - Sistermans, E.A.
AU - Sorbi, S.
AU - van Spaendonk, R.
AU - Spalletta, G.
AU - Tesi, N.
AU - Tijms, B.
AU - Uitterlinden, A.G.
AU - van der Lee, S.J.
AU - Visser, P.J.
AU - Wagner, M.
AU - Wallon, D.
AU - Wang, L.-S.
AU - Zarea, A.
AU - Clarimon, J.
AU - van Swieten, J.C.
AU - Greicius, M.D.
AU - Yokoyama, J.S.
AU - Cruchaga, C.
AU - Hardy, J.
AU - Ramirez, A.
AU - Mead, S.
AU - van der Flier, W.M.
AU - van Duijn, C.M.
AU - Williams, J.
AU - Nicolas, G.
AU - Bellenguez, C.
AU - Lambert, J.-C.
N1 - Funding Information: We thank all the study participants, their families, the participating medical staff, general practitioners, pharmacists and all laboratory personnel involved in patient diagnosis, blood collection, blood biobanking, DNA preparation and sequencing. The work in this manuscript was carried out on the Cartesius supercomputer, which is embedded in the Dutch national e-infrastructure with the support of the SURF Cooperative. Computing hours were granted in 2016, 2017, 2018 and 2019 to H. Holstege by the Dutch Research Council (project name: 100-plus; project nos. 15318 and 17232). This research was conducted using the funding obtained by the following study cohorts: ADES-FR, AgeCoDe-UKBonn; Barcelona SPIN; AC-EMC; ERF and Rotterdam; ADC-Amsterdam; 100-plus study; EMIF-90+; Control Brain Consortium; PERADES; StEP-AD; Knight-ADRC; UCSF/NYGC/UAB; UCL-DRC EOAD; ADSP. Data used in preparation of this article were obtained from the Alzheimer’s Disease Neuroimaging Initiative (ADNI) database (https://adni.loni.usc.edu/). The investigators within ADNI are listed as supplementary authors and can be found in Section 5 of the Supplementary Note. Full consortium acknowledgements and funding sources are listed in Section 4 of the Supplementary Note. Publisher Copyright: © 2022, The Author(s).
PY - 2022/12/1
Y1 - 2022/12/1
N2 - © 2022, The Author(s).Alzheimer’s disease (AD), the leading cause of dementia, has an estimated heritability of approximately 70%1. The genetic component of AD has been mainly assessed using genome-wide association studies, which do not capture the risk contributed by rare variants2. Here, we compared the gene-based burden of rare damaging variants in exome sequencing data from 32,558 individuals—16,036 AD cases and 16,522 controls. Next to variants in TREM2, SORL1 and ABCA7, we observed a significant association of rare, predicted damaging variants in ATP8B4 and ABCA1 with AD risk, and a suggestive signal in ADAM10. Additionally, the rare-variant burden in RIN3, CLU, ZCWPW1 and ACE highlighted these genes as potential drivers of respective AD-genome-wide association study loci. Variants associated with the strongest effect on AD risk, in particular loss-of-function variants, are enriched in early-onset AD cases. Our results provide additional evidence for a major role for amyloid-β precursor protein processing, amyloid-β aggregation, lipid metabolism and microglial function in AD.
AB - © 2022, The Author(s).Alzheimer’s disease (AD), the leading cause of dementia, has an estimated heritability of approximately 70%1. The genetic component of AD has been mainly assessed using genome-wide association studies, which do not capture the risk contributed by rare variants2. Here, we compared the gene-based burden of rare damaging variants in exome sequencing data from 32,558 individuals—16,036 AD cases and 16,522 controls. Next to variants in TREM2, SORL1 and ABCA7, we observed a significant association of rare, predicted damaging variants in ATP8B4 and ABCA1 with AD risk, and a suggestive signal in ADAM10. Additionally, the rare-variant burden in RIN3, CLU, ZCWPW1 and ACE highlighted these genes as potential drivers of respective AD-genome-wide association study loci. Variants associated with the strongest effect on AD risk, in particular loss-of-function variants, are enriched in early-onset AD cases. Our results provide additional evidence for a major role for amyloid-β precursor protein processing, amyloid-β aggregation, lipid metabolism and microglial function in AD.
UR - http://www.scopus.com/inward/record.url?scp=85142346472&partnerID=8YFLogxK
U2 - https://doi.org/10.1038/s41588-022-01208-7
DO - https://doi.org/10.1038/s41588-022-01208-7
M3 - Article
C2 - 36411364
SN - 1061-4036
VL - 54
SP - 1786
EP - 1794
JO - Nature Genetics
JF - Nature Genetics
IS - 12
ER -