Application of minimal sequence quality values prevents misidentification of the blaSHV type in single bacterial isolates carrying different SHV extended-spectrum beta-lactamase genes

Nashwan Al Naiemi; Kim Schipper; Birgitta Duim; Aldert Bart

doi:https://doi.org/10.1128/JCM.44.5.1896-1898.2006

Application of minimal sequence quality values prevents misidentification of the blaSHV type in single bacterial isolates carrying different SHV extended-spectrum beta-lactamase genes

Nashwan Al Naiemi, Kim Schipper, Birgitta Duim, Aldert Bart

Research output: Contribution to journal › Article › Academic › peer-review

10 Citations (Scopus)

Abstract

Nucleotide sequencing is the standard molecular method for determination of the beta-lactamase gene present in an isolate. Using minimal sequence quality values prevents misidentification of bla(SHV) genes, as illustrated by three strains of three different species that each contained two different bla(SHV) alleles, SHV-2 and SHV-12

Original language	English
Pages (from-to)	1896-1898
Journal	Journal of clinical microbiology
Volume	44
Issue number	5
DOIs	https://doi.org/10.1128/JCM.44.5.1896-1898.2006
Publication status	Published - 2006

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https://doi.org/10.1128/JCM.44.5.1896-1898.2006

Cite this

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title = "Application of minimal sequence quality values prevents misidentification of the blaSHV type in single bacterial isolates carrying different SHV extended-spectrum beta-lactamase genes",

abstract = "Nucleotide sequencing is the standard molecular method for determination of the beta-lactamase gene present in an isolate. Using minimal sequence quality values prevents misidentification of bla(SHV) genes, as illustrated by three strains of three different species that each contained two different bla(SHV) alleles, SHV-2 and SHV-12",

author = "{Al Naiemi}, Nashwan and Kim Schipper and Birgitta Duim and Aldert Bart",

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language = "English",

volume = "44",

pages = "1896--1898",

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issn = "0095-1137",

publisher = "American Society for Microbiology",

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Application of minimal sequence quality values prevents misidentification of the blaSHV type in single bacterial isolates carrying different SHV extended-spectrum beta-lactamase genes. / Al Naiemi, Nashwan; Schipper, Kim; Duim, Birgitta et al.
In: Journal of clinical microbiology, Vol. 44, No. 5, 2006, p. 1896-1898.

Research output: Contribution to journal › Article › Academic › peer-review

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AU - Schipper, Kim

AU - Duim, Birgitta

AU - Bart, Aldert

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AB - Nucleotide sequencing is the standard molecular method for determination of the beta-lactamase gene present in an isolate. Using minimal sequence quality values prevents misidentification of bla(SHV) genes, as illustrated by three strains of three different species that each contained two different bla(SHV) alleles, SHV-2 and SHV-12

U2 - https://doi.org/10.1128/JCM.44.5.1896-1898.2006

DO - https://doi.org/10.1128/JCM.44.5.1896-1898.2006

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