Histopathological classification of precursor lesions of esophageal adenocarcinoma: A Deep Multiple Instance Learning Approach

Jakub Tomczak, Maximilian Ilse, Max Welling, Marnix Jansen, Helen Coleman, Marit Lucas, Kikki de Laat, Henk Marquering, Myrtle van der Wel, Onno de Boer, Dilara Savci-Heijink, S.L. Meijer

Research output: Working paperAcademic

Abstract

In this paper, we hypothesize that morphological properties of nuclei are crucial
for classifying dysplastic changes. Therefore, we propose to represent a whole
histopathology slide as a collection of smaller images containing patches of nuclei
and adjacent tissue. For this purpose, we use a deep multiple instance learning
approach. Within this framework we first embed patches in a low-dimensional
space using convolutional and fully-connected layers. Next, we combine the lowdimensional embeddings using a multiple instance learning pooling operator and
eventually we use fully-connected layers to provide a classification. We evaluate
our approach on esophagus cancer histopathology dataset.
Original languageEnglish
Number of pages3
Publication statusPublished - 2018

Keywords

  • Barrett Esophagus
  • Computational pathology
  • Deep learning (DL)

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