TY - GEN
T1 - Inter-center cross-validation and finetuning without patient data sharing for predicting transcatheter aortic valve implantation outcome
AU - Lopes, Ricardo R.
AU - Mamprin, Marco
AU - Zelis, Jo M.
AU - Tonino, Pim A. L.
AU - van Mourik, Martijn S.
AU - Vis, Marije M.
AU - Zinger, Sveta
AU - de Mol, Bas A. J. M.
AU - de With, Peter H. N.
AU - Marquering, Henk A.
PY - 2020/7/1
Y1 - 2020/7/1
N2 - Transcatheter aortic valve implantation (TAVI) is the routine treatment worldwide for aortic valve stenosis in low-to high-risk patients. Assessing patient risk is essential to identify the most suitable candidates that could benefit from the procedure. Despite the broad use of statistical predictors in patient selection, current machine learning predictors have only been validated on retrospective data collected in single centers. Further, external validation is needed to assess the improvement in accuracy, which is offered by machine learning and deep learning techniques. In this study, we propose a finetuning approach for deep learning models by performing an inter-center cross-validation and finetuning technique, in order to improve the cross-validation accuracy results. We aimed to overcome data exchange and policy-related issues of two medical centers with a dedicated protocol, exploiting the exchange of deep learning models, data processing and validation steps which does not require any patient data sharing. The finetuning is based on the other center's data for further training of the initial model. After finetuning the model, we obtain an average AUC improvement of 13% and 7% with respect to the initial models. This research demonstrates that the predicting capabilities of deep learning models can be extended to and cross-validated with other centers, independent of limitations in data-sharing policies. Moreover, the study shows that finetuning can be exploited to considerably improve the accuracy of the prediction models.
AB - Transcatheter aortic valve implantation (TAVI) is the routine treatment worldwide for aortic valve stenosis in low-to high-risk patients. Assessing patient risk is essential to identify the most suitable candidates that could benefit from the procedure. Despite the broad use of statistical predictors in patient selection, current machine learning predictors have only been validated on retrospective data collected in single centers. Further, external validation is needed to assess the improvement in accuracy, which is offered by machine learning and deep learning techniques. In this study, we propose a finetuning approach for deep learning models by performing an inter-center cross-validation and finetuning technique, in order to improve the cross-validation accuracy results. We aimed to overcome data exchange and policy-related issues of two medical centers with a dedicated protocol, exploiting the exchange of deep learning models, data processing and validation steps which does not require any patient data sharing. The finetuning is based on the other center's data for further training of the initial model. After finetuning the model, we obtain an average AUC improvement of 13% and 7% with respect to the initial models. This research demonstrates that the predicting capabilities of deep learning models can be extended to and cross-validated with other centers, independent of limitations in data-sharing policies. Moreover, the study shows that finetuning can be exploited to considerably improve the accuracy of the prediction models.
KW - Aortic valve disease
KW - Deep learning
KW - Inter-center cross-validation
KW - One year mortality prediction
KW - Outcome prediction
KW - Prognosis
KW - TAVI
KW - Transcatheter aortic valve implantation
UR - http://www.scopus.com/inward/record.url?scp=85091160060&partnerID=8YFLogxK
U2 - https://doi.org/10.1109/CBMS49503.2020.00117
DO - https://doi.org/10.1109/CBMS49503.2020.00117
M3 - Conference contribution
VL - 2020-July
T3 - Proceedings - IEEE Symposium on Computer-Based Medical Systems
SP - 591
EP - 596
BT - Proceedings - 2020 IEEE 33rd International Symposium on Computer-Based Medical Systems, CBMS 2020
A2 - de Herrera, Alba Garcia Seco
A2 - Rodriguez Gonzalez, Alejandro
A2 - Santosh, KC
A2 - Temesgen, Zelalem
A2 - Kane, Bridget
A2 - Soda, Paolo
PB - Institute of Electrical and Electronics Engineers Inc.
T2 - 33rd IEEE International Symposium on Computer-Based Medical Systems, CBMS 2020
Y2 - 28 July 2020 through 30 July 2020
ER -