TY - JOUR
T1 - The ISMRM Open Science Initiative for Perfusion Imaging (OSIPI)
T2 - Results from the OSIPI–Dynamic Contrast-Enhanced challenge
AU - Shalom, Eve S.
AU - Kim, Harrison
AU - van der Heijden, Rianne A.
AU - Ahmed, Zaki
AU - Patel, Reyna
AU - Hormuth, David A.
AU - DiCarlo, Julie C.
AU - Yankeelov, Thomas E.
AU - Sisco, Nicholas J.
AU - Dortch, Richard D.
AU - Stokes, Ashley M.
AU - Inglese, Marianna
AU - Grech-Sollars, Matthew
AU - Toschi, Nicola
AU - Sahoo, Prativa
AU - Singh, Anup
AU - Verma, Sanjay K.
AU - Rathore, Divya K.
AU - Kazerouni, Anum S.
AU - Partridge, Savannah C.
AU - LoCastro, Eve
AU - Paudyal, Ramesh
AU - Wolansky, Ivan A.
AU - Shukla-Dave, Amita
AU - Schouten, Pepijn
AU - Gurney-Champion, Oliver J.
AU - Jiřík, Radovan
AU - Macíček, Ondřej
AU - Bartoš, Michal
AU - Vitouš, Jiří
AU - Das, Ayesha Bharadwaj
AU - Kim, S. Gene
AU - Bokacheva, Louisa
AU - Mikheev, Artem
AU - Rusinek, Henry
AU - Berks, Michael
AU - Hubbard Cristinacce, Penny L.
AU - Little, Ross A.
AU - Cheung, Susan
AU - O'Connor, James P. B.
AU - Parker, Geoff J. M.
AU - Moloney, Brendan
AU - LaViolette, Peter S.
AU - Bobholz, Samuel
AU - Duenweg, Savannah
AU - Virostko, John
AU - Laue, Hendrik O.
AU - Sung, Kyunghyun
AU - Nabavizadeh, Ali
AU - Saligheh Rad, Hamidreza
AU - Hu, Leland S.
AU - Sourbron, Steven
AU - Bell, Laura C.
AU - Fathi Kazerooni, Anahita
N1 - Funding Information: E.S.S. receives partial research support from Bayer AG via EPSRC‐CASE studentship. S.P.S. receives partial research support from Bayer AG. G.J.M.P. is a director and shareholder in Bioxydyn Limited, a company with an interest in DCEMRI. L.C.B. is an employee at Genentech Inc. R.v.d.H. is employed by the University of Wisconsin, which receives research support from Bracco Diagnostics. Publisher Copyright: © 2023 International Society for Magnetic Resonance in Medicine.
PY - 2023
Y1 - 2023
N2 - Purpose: (Formula presented.) has often been proposed as a quantitative imaging biomarker for diagnosis, prognosis, and treatment response assessment for various tumors. None of the many software tools for (Formula presented.) quantification are standardized. The ISMRM Open Science Initiative for Perfusion Imaging–Dynamic Contrast-Enhanced (OSIPI-DCE) challenge was designed to benchmark methods to better help the efforts to standardize (Formula presented.) measurement. Methods: A framework was created to evaluate (Formula presented.) values produced by DCE-MRI analysis pipelines to enable benchmarking. The perfusion MRI community was invited to apply their pipelines for (Formula presented.) quantification in glioblastoma from clinical and synthetic patients. Submissions were required to include the entrants' (Formula presented.) values, the applied software, and a standard operating procedure. These were evaluated using the proposed (Formula presented.) score defined with accuracy, repeatability, and reproducibility components. Results: Across the 10 received submissions, the (Formula presented.) score ranged from 28% to 78% with a 59% median. The accuracy, repeatability, and reproducibility scores ranged from 0.54 to 0.92, 0.64 to 0.86, and 0.65 to 1.00, respectively (0–1 = lowest–highest). Manual arterial input function selection markedly affected the reproducibility and showed greater variability in (Formula presented.) analysis than automated methods. Furthermore, provision of a detailed standard operating procedure was critical for higher reproducibility. Conclusions: This study reports results from the OSIPI-DCE challenge and highlights the high inter-software variability within (Formula presented.) estimation, providing a framework for ongoing benchmarking against the scores presented. Through this challenge, the participating teams were ranked based on the performance of their software tools in the particular setting of this challenge. In a real-world clinical setting, many of these tools may perform differently with different benchmarking methodology.
AB - Purpose: (Formula presented.) has often been proposed as a quantitative imaging biomarker for diagnosis, prognosis, and treatment response assessment for various tumors. None of the many software tools for (Formula presented.) quantification are standardized. The ISMRM Open Science Initiative for Perfusion Imaging–Dynamic Contrast-Enhanced (OSIPI-DCE) challenge was designed to benchmark methods to better help the efforts to standardize (Formula presented.) measurement. Methods: A framework was created to evaluate (Formula presented.) values produced by DCE-MRI analysis pipelines to enable benchmarking. The perfusion MRI community was invited to apply their pipelines for (Formula presented.) quantification in glioblastoma from clinical and synthetic patients. Submissions were required to include the entrants' (Formula presented.) values, the applied software, and a standard operating procedure. These were evaluated using the proposed (Formula presented.) score defined with accuracy, repeatability, and reproducibility components. Results: Across the 10 received submissions, the (Formula presented.) score ranged from 28% to 78% with a 59% median. The accuracy, repeatability, and reproducibility scores ranged from 0.54 to 0.92, 0.64 to 0.86, and 0.65 to 1.00, respectively (0–1 = lowest–highest). Manual arterial input function selection markedly affected the reproducibility and showed greater variability in (Formula presented.) analysis than automated methods. Furthermore, provision of a detailed standard operating procedure was critical for higher reproducibility. Conclusions: This study reports results from the OSIPI-DCE challenge and highlights the high inter-software variability within (Formula presented.) estimation, providing a framework for ongoing benchmarking against the scores presented. Through this challenge, the participating teams were ranked based on the performance of their software tools in the particular setting of this challenge. In a real-world clinical setting, many of these tools may perform differently with different benchmarking methodology.
KW - DCE-MRI
KW - challenge
KW - data analysis
KW - glioblastoma
KW - open-science
KW - perfusion
UR - http://www.scopus.com/inward/record.url?scp=85180171278&partnerID=8YFLogxK
U2 - https://doi.org/10.1002/mrm.29909
DO - https://doi.org/10.1002/mrm.29909
M3 - Article
C2 - 38115695
SN - 0740-3194
JO - Magnetic resonance in medicine
JF - Magnetic resonance in medicine
ER -