The novel antibiotic rhodomyrtone traps membrane proteins in vesicles with increased fluidity

Dennapa Saeloh, Varomyalin Tipmanee, Kin Ki Jim, Marien P. Dekker, Wilbert Bitter, Supayang P. Voravuthikunchai, Michaela Wenzel, Leendert W. Hamoen

Research output: Contribution to journalArticleAcademicpeer-review

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The acylphloroglucinol rhodomyrtone is a promising new antibiotic isolated from the rose myrtle Rhodomyrtus tomentosa, a plant used in Asian traditional medicine. While many studies have demonstrated its antibacterial potential in a variety of clinical applications, very little is known about the mechanism of action of rhodomyrtone. Preceding studies have been focused on intracellular targets, but no specific intracellular protein could be confirmed as main target. Using live cell, high-resolution, and electron microscopy we demonstrate that rhodomyrtone causes large membrane invaginations with a dramatic increase in fluidity, which attract a broad range of membrane proteins. Invaginations then form intracellular vesicles, thereby trapping these proteins. Aberrant protein localization impairs several cellular functions, including the respiratory chain and the ATP synthase complex. Being uncharged and devoid of a particular amphipathic structure, rhodomyrtone did not seem to be a typical membrane-inserting molecule. In fact, molecular dynamics simulations showed that instead of inserting into the bilayer, rhodomyrtone transiently binds to phospholipid head groups and causes distortion of lipid packing, providing explanations for membrane fluidization and induction of membrane curvature. Both its transient binding mode and its ability to form protein-trapping membrane vesicles are unique, making it an attractive new antibiotic candidate with a novel mechanism of action.

Original languageEnglish
Article numbere1006876
Number of pages35
JournalPLoS pathogens
Issue number2
Publication statusPublished - 16 Feb 2018


  • Anti-Bacterial Agents/pharmacokinetics
  • Bacillus subtilis/drug effects
  • Cell Membrane Permeability/drug effects
  • Membrane Fluidity/drug effects
  • Membrane Proteins/chemistry
  • Microbial Sensitivity Tests
  • Molecular Docking Simulation
  • Transport Vesicles/drug effects
  • Xanthones/pharmacokinetics

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