Marcus de Goffau

Research output

Research output per year 2020 2020 2021 2022 2023 2024

• 16 Article
• 4 Review article
• 2 Comment/Letter to the editor
• 1 Conference contribution

Research output per year

Research output per year

Search results

• 2024

  Ethnic variations in metabolic syndrome components and their associations with the gut microbiota: the HELIUS study

  Balvers, M., de Goffau, M., van Riel, N., van den Born, B-J., Galenkamp, H., Zwinderman, K., Nieuwdorp, M. & Levin, E., 1 Dec 2024, In: Genome Medicine. 16, 1, 41.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Networks of gut bacteria relate to cardiovascular disease in a multi-ethnic population: the HELIUS study

  Warmbrunn, M. V., Boulund, U., Aron-Wisnewsky, J., de Goffau, M. C., Abeka, R. E., Davids, M., Bresser, L. R. F., Levin, E., Clement, K., Galenkamp, H., Ferwerda, B., van den Born, B-J. J. H., Kurilshikov, A., Fu, J., Zwinderman, A. H., Soeters, M. R., van Raalte, D. H., Herrema, H., Groen, A. K. & Nieuwdorp, M., 1 Mar 2024, In: Cardiovascular research. 120, 4, p. 372-384 13 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
• 2023

  Concordance between culture, Molecular Culture and Illumina 16S rRNA gene amplicon sequencing of bone and ulcer bed biopsies in people with diabetic foot osteomyelitis

  Gramberg, M. C. T. T., Knippers, C., Lagrand, R. S., van Hattem, J. M., de Goffau, M. C., Budding Budding, A. E., Davids, M., Matamoros, S., Nieuwdorp, M., de Groot, V., Heijer, M. D., Sabelis, L. W. E. & Peters, E. J. G., 1 Dec 2023, In: BMC Infectious Diseases. 23, 1, p. 505 505.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Cystic Fibrosis-Related Gut Dysbiosis: A Systematic Review

  Caley, L. R., White, H., de Goffau, M. C., Floto, R. A., Parkhill, J., Marsland, B. & Peckham, D. G., May 2023, In: Digestive Diseases and Sciences. 68, 5, p. 1797-1814 18 p.

  Research output: Contribution to journal › Article › Academic › peer-review
  11 Citations (Scopus)

• Gut microbiome transitions across generations in different ethnicities in an urban setting—the HELIUS study

  van der Vossen, E. W. J., Davids, M., Bresser, L. R. F., Galenkamp, H., Zwinderman, A. H., Levin, E., Nieuwdorp, M., de Goffau, M. C. & van den Born, B-J. H., 1 Dec 2023, In: Microbiome. 11, 1, 99.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  2 Citations (Scopus)

• Identifying Gut Microbiota associated with Gastrointestinal Symptoms upon Roux-en-Y Gastric Bypass

  Wijdeveld, M., van Olst, N., van der Vossen, E. W. J., de Brauw, M., Acherman, Y. I. Z., de Goffau, M. C., Gerdes, V. E. A. & Nieuwdorp, M., Jun 2023, In: Obesity Surgery. 33, 6, p. 1635-1645 11 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  2 Citations (Scopus)

• Optimization of high-throughput 16S rRNA gene amplicon sequencing: an assessment of PCR pooling, mastermix use and contamination

  CARRIAGE Study Team, 1 Oct 2023, In: Microbial genomics. 9, 10, 001115.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Placental Streptococcus agalactiae DNA is associated with neonatal unit admission and foetal pro-inflammatory cytokines in term infants

  Gaccioli, F., Stephens, K., Sovio, U., Jessop, F., Wong, H. S., Lager, S., Cook, E., de Goffau, M. C., le Doare, K., Peacock, S. J., Parkhill, J., Charnock-Jones, D. S. & Smith, G. C. S., 1 Dec 2023, In: Nature Microbiology. 8, 12, p. 2338-2348

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

• Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies

  Kennedy, K. M., de Goffau, M. C., Perez-Mu?oz, M. E., Arrieta, M-C., B?ckhed, F., Bork, P., Braun, T., Bushman, F. D., Dore, J., de Vos, W. M., Earl, A. M., Eisen, J. A., Elovitz, M. A., Ganal-Vonarburg, S. C., G?nzle, M. G., Garrett, W. S., Hall, L. J., Hornef, M. W., Huttenhower, C., Konnikova, L., & 26 othersLebeer, S., Macpherson, A. J., Massey, R. C., McHardy, A. C., Koren, O., Lawley, T. D., Ley, R. E., O?Mahony, L., O?Toole, P. W., Pamer, E. G., Parkhill, J., Raes, J., Rattei, T., Salonen, A., Segal, E., Segata, N., Shanahan, F., Sloboda, D. M., Smith, G. C. S., Sokol, H., Spector, T. D., Surette, M. G., Tannock, G. W., Walker, A. W., Yassour, M. & Walter, J., 26 Jan 2023, In: NATURE. 613, 7945, p. 639-649 11 p.

  Research output: Contribution to journal › Review article › Academic › peer-review
  101 Citations (Scopus)
• 2022

  Gut microbiomes from Gambian infants reveal the development of a non-industrialized Prevotella-based trophic network

  de Goffau, M. C., Jallow, A. T., Sanyang, C., Prentice, A. M., Meagher, N., Price, D. J., Revill, P. A., Parkhill, J., Pereira, D. I. A. & Wagner, J., 1 Jan 2022, In: Nature Microbiology. 7, 1, p. 132-144 13 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  28 Citations (Scopus)

• Gut Microbiota in Nutrition and Health with a Special Focus on Specific Bacterial Clusters

  Bresser, L. R. F., de Goffau, M. C., Levin, E. & Nieuwdorp, M., 1 Oct 2022, In: Cells. 11, 19, 3091.

  Research output: Contribution to journal › Review article › Academic › peer-review

  Open Access
  9 Citations (Scopus)

• Patients With Inflammatory Bowel Disease Show IgG Immune Responses Towards Specific Intestinal Bacterial Genera

  Bourgonje, A. R., Roo-Brand, G., Lisotto, P., Sadaghian Sadabad, M., Reitsema, R. D., de Goffau, M. C., Faber, K. N., Dijkstra, G. & Harmsen, H. J. M., 25 May 2022, In: Frontiers in immunology. 13, 842911.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  10 Citations (Scopus)

• Profiling gut microbiota and bile acid metabolism in critically ill children

  Kean, I. R. L., Wagner, J., Wijeyesekera, A., de Goffau, M., Thurston, S., Clark, J. A., White, D. K., Ridout, J., Agrawal, S., Kayani, R., O’Donnell, R., Ramnarayan, P., Peters, M. J., Klein, N., Holmes, E., Parkhill, J., Baker, S. & Pathan, N., 1 Dec 2022, In: Scientific reports. 12, 1, 10432.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  5 Citations (Scopus)

• Recent insights into the role of microbiome in the pathogenesis of obesity

  van der Vossen, E. W. J., de Goffau, M. C., Levin, E. & Nieuwdorp, M., 2022, In: Therapeutic advances in gastroenterology. 15

  Research output: Contribution to journal › Review article › Academic › peer-review

  Open Access
  6 Citations (Scopus)

• When to suspect contamination rather than colonization–lessons from a putative fetal sheep microbiome

  Bihl, S., de Goffau, M., Podlesny, D., Segata, N., Shanahan, F., Walter, J. & Fricke, W. F., 2022, In: Gut Microbes. 14, 1, 2005751.

  Research output: Contribution to journal › Comment/Letter to the editor › Academic

  Open Access
  2 Citations (Scopus)
• 2021

  Effects of fecal microbiota transplant on DNA methylation in subjects with metabolic syndrome

  van der Vossen, E. W. J., Bastos, D., Stols-Gonçalves, D., de Goffau, M. C., Davids, M., Pereira, J. P. B., Li Yim, A. Y. F., Henneman, P., Netea, M. G., de Vos, W. M., de Jonge, W., Groen, A. K., Nieuwdorp, M. & Levin, E., 2021, In: Gut Microbes. 13, 1, 1993513.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  26 Citations (Scopus)

• Interpretable Models via Pairwise Permutations Algorithm

  Maasland, T., Pereira, J., Bastos, D., de Goffau, M., Nieuwdorp, M., Zwinderman, A. H. & Levin, E., 2021, Machine Learning and Principles and Practice of Knowledge Discovery in Databases - International Workshops of ECML PKDD 2021, Proceedings. Kamp, M., Koprinska, I., Bibal, A., Bouadi, T., Frénay, B., Galárraga, L., Oramas, J., Adilova, L., Krishnamurthy, Y., Kang, B., Largeron, C., Lijffijt, J., Viard, T., Welke, P., Ruocco, M., Aune, E., Gallicchio, C., Schiele, G., Pernkopf, F., Blott, M., Fröning, H., Schindler, G., Guidotti, R., Monreale, A., Rinzivillo, S., Biecek, P., Ntoutsi, E., Pechenizkiy, M., Rosenhahn, B., Buckley, C., Cialfi, D., Lanillos, P., Ramstead, M., Verbelen, T., Ferreira, P. M., Andresini, G., Malerba, D., Medeiros, I., Fournier-Viger, P., Nawaz, M. S., Ventura, S., Sun, M., Zhou, M., Bitetta, V., Bordino, I., Ferretti, A., Gullo, F., Ponti, G., Severini, L., Ribeiro, R., Gama, J., Gavaldà, R., Cooper, L., Ghazaleh, N., Richiardi, J., Roqueiro, D., Saldana Miranda, D., Sechidis, K. & Graça, G. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 1524 CCIS. p. 15-25 (Communications in Computer and Information Science).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)

• Over-celling fetal microbial exposure

  Kennedy, K. M., Bellissimo, C. J., Breznik, J. A., Barrett, J., Braun, T., Bushman, F. D., de Goffau, M., Elovitz, M. A., Heimesaat, M. M., Konnikova, L., Koren, O., Parry, S., Rossi, L., Segata, N., Simmons, R. A., Surette, M. G., Walter, J. & Sloboda, D. M., 24 Nov 2021, In: Cell. 184, 24, p. 5839-5841 3 p.

  Research output: Contribution to journal › Comment/Letter to the editor › Academic
  10 Citations (Scopus)

• Weight shapes the intestinal microbiome in preterm infants: results of a prospective observational study

  Heida, F. H., Kooi, E. M. W., Wagner, J., Nguyen, T-Y., Hulscher, J. B. F., van Zoonen, A. G. J. F., Bos, A. F., Harmsen, H. J. M. & de Goffau, M. C., 1 Dec 2021, In: BMC microbiology. 21, 1, 219.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  9 Citations (Scopus)
• 2020

  Fetal inheritance of chromosomally integrated human herpesvirus 6 predisposes the mother to pre-eclampsia

  Gaccioli, F., Lager, S., de Goffau, M. C., Sovio, U., Dopierala, J., Gong, S., Cook, E., Sharkey, A., Moffett, A., Lee, W. K., Delles, C., Venturini, C., Breuer, J., Parkhill, J., Peacock, S. J., Charnock-Jones, D. S. & Smith, G. C. S., 1 Jul 2020, In: Nature Microbiology. 5, 7, p. 901-908 8 p.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  25 Citations (Scopus)

• Immunomodulatory Effects of Rhinovirus and Enterovirus Infections During the First Year of Life

  the DIABIMMUNE Study Group, 11 Feb 2020, In: Frontiers in immunology. 11, 567046.

  Research output: Contribution to journal › Article › Academic › peer-review
  2 Citations (Scopus)

• Increasing incidence of group B streptococcus neonatal infections in the Netherlands is associated with clonal expansion of CC17 and CC23

  Jamrozy, D., Bijlsma, M. W., de Goffau, M. C., van de Beek, D., Kuijpers, T. W., Parkhill, J., van der Ende, A. & Bentley, S. D., 1 Dec 2020, In: Scientific reports. 10, 1, 9539.

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access
  24 Citations (Scopus)

• STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies

  Bharucha, T., Oeser, C., Balloux, F., Brown, J. R., Carbo, E. C., Charlett, A., Chiu, C. Y., Claas, E. C. J., de Goffau, M. C., de Vries, J. J. C., Eloit, M., Hopkins, S., Huggett, J. F., MacCannell, D., Morfopoulou, S., Nath, A., O'Sullivan, D. M., Reoma, L. B., Shaw, L. P., Sidorov, I., & 7 othersSimner, P. J., van Tan, L., Thomson, E. C., van Dorp, L., Wilson, M. R., Breuer, J. & Field, N., Oct 2020, In: Lancet infectious diseases. 20, 10, p. e251-e260

  Research output: Contribution to journal › Review article › Academic › peer-review

  Open Access
  42 Citations (Scopus)