Amsterdam Neuroscience - Brain Imaging

Research output

Research output per year 1982 2021 2022 2023 2024

• 2250 Article
• 184 Review article
• 173 Meeting Abstract
• 98 Conference contribution
• 318 More
  • 92 Comment/Letter to the editor
  • 63 Phd-Thesis - Research and graduation internal
  • 49 Chapter
  • 35 Editorial
  • 22 Paper
  • 21 Letter
  • 12 Erratum/Corrigendum
  • 9 Poster
  • 4 Patent
  • 3 Abstract
  • 3 Short survey
  • 1 Book
  • 1 Report
  • 1 Inaugural speech
  • 1 Software
  • 1 Phd-Thesis - Research and graduation external

Research output per year

Research output per year

Search results

• 2024

  Deep Learning for Automatic Strain Quantification in Arrhythmogenic Right Ventricular Cardiomyopathy

  Alvarez-Florez, L., Sander, J. R., Bourfiss, M., Tjong, F. V. Y., Velthuis, B. K. & Išgum, I., 2024, Statistical Atlases and Computational Models of the Heart. Regular and CMRxRecon Challenge Papers - 14th International Workshop, STACOM 2023, Held in Conjunction with MICCAI 2023, Revised Selected Papers. Camara, O., Puyol-Antón, E., Suinesiaputra, A., Young, A., Sermesant, M., Tao, Q. & Wang, C. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 14507 LNCS. p. 25-34 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14507 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  Open Access

• Leveraging Ellipsoid Bounding Shapes and Fast R-CNN for Enlarged Perivascular Spaces Detection and Segmentation

  Zabihi, M., Tangwiriyasakul, C., Ingala, S., Lorenzini, L., Camarasa, R., Barkhof, F., de Bruijne, M., Cardoso, M. J. & Sudre, C. H., 2024, Machine Learning in Medical Imaging - 14th International Workshop, MLMI 2023, Held in Conjunction with MICCAI 2023, Proceedings. Cao, X., Ouyang, X., Xu, X., Rekik, I. & Cui, Z. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 14349 LNCS. p. 325-334 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14349 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2023

  A Coupled-Mechanisms Modelling Framework for Neurodegeneration

  He, T., Thompson, E., Schroder, A., Oxtoby, N. P., Abdulaal, A., Barkhof, F. & Alexander, D. C., 2023, Medical Image Computing and Computer Assisted Intervention – MICCAI 2023 - 26th International Conference, Proceedings. Greenspan, H., Madabhushi, A., Mousavi, P., Salcudean, S., Duncan, J., Syeda-Mahmood, T. & Taylor, R. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 14227 LNCS. p. 459-469 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14227 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)

• DeepBrainPrint: A Novel Contrastive Framework for Brain MRI Re-Identification

  Puglisi, L. & The Alzheimer's Disease Neuroimaging Initiative, 2023, Medical Imaging with Deep Learning 2023, MIDL 2023. Oguz, I., Noble, J., Li, X., Styner, M., Baumgartner, C., Rusu, M., Heinmann, T., Kontos, D., Landman, B. & Dawant, B. (eds.). ML Research Press, Vol. 227. p. 716-729 (Proceedings of Machine Learning Research).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Deformable Image Registration with Geometry-informed Implicit Neural Representations

  van Harten, L. D., van Herten, R. L. M., Stoker, J. & Išgum, I., 2023, Medical Imaging with Deep Learning 2023, MIDL 2023. Oguz, I., Noble, J., Li, X., Styner, M., Baumgartner, C., Rusu, M., Heinmann, T., Kontos, D., Landman, B. & Dawant, B. (eds.). ML Research Press, Vol. 227. p. 730-742 (Proceedings of Machine Learning Research).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Fluorescence and Raman imaging of amyloid plaques reveals carotenoid accumulations

  Lochocki, B., Ettema, L., Hoozemans, J. J. M., De Boer, J. F. & Ariese, F., 11 Aug 2023, Translational Biophotonics: Diagnostics and Therapeutics III. Huang, Z. & Lilge, L. D. (eds.). SPIE, Vol. 12627. 126270C. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 12627).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Generative Adversarial Networks for Coronary CT Angiography Acquisition Protocol Correction with Explicit Attenuation Constraints

  van Herten, R. L. M., van Harten, L. D., Nils Planken, R. & Išgum, I., 2023, Medical Imaging with Deep Learning 2023, MIDL 2023. Oguz, I., Noble, J., Li, X., Styner, M., Baumgartner, C., Rusu, M., Heinmann, T., Kontos, D., Landman, B. & Dawant, B. (eds.). ML Research Press, Vol. 227. p. 1288-1303 (Proceedings of Machine Learning Research).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Improving the Reliability of Medical Diagnostic Models through Rule-Based Decision Deferral

  Bereska, J. I., Marquering, H., Besselink, M., Stoker, J. & Verpalen, I., 3 Oct 2023, Proceedings of the Inaugural 2023 Summer Symposium Series 2023. Soh, H., Geib, C. & Petrick, R. (eds.). AAAI Press, p. 122-126 5 p. (Proceedings of the Inaugural 2023 Summer Symposium Series 2023).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• MultiTask Learning for accelerated-MRI Reconstruction and Segmentation of Brain Lesions in Multiple Sclerosis

  Karkalousos, D., Išgum, I., Marquering, H. A. & Caan, M. W. A., 2023, Medical Imaging with Deep Learning 2023, MIDL 2023. Oguz, I., Noble, J., Li, X., Styner, M., Baumgartner, C., Rusu, M., Heinmann, T., Kontos, D., Landman, B. & Dawant, B. (eds.). ML Research Press, Vol. 227. p. 991-1005 (Proceedings of Machine Learning Research).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Temporally Consistent Segmentations from Sparsely Labeled Echocardiograms Using Image Registration for Pseudo-labels Generation

  Tafuro, M., Jansen, G. & Išgum, I., 2023, Simplifying Medical Ultrasound - 4th International Workshop, ASMUS 2023, Held in Conjunction with MICCAI 2023, Proceedings. Kainz, B., Müller, J. P., Noble, A., Schnabel, J., Khanal, B. & Day, T. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 14337 LNCS. p. 195-204 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14337 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Wavelength Scanning Multimode Fiber Imaging

  Lochocki, B., Ivanina, A., Bandhoe, A., de Boer, J. F. & Amitonova, L. V., 2023, 2023 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2023: [Proceedings]. Institute of Electrical and Electronics Engineers Inc., (2023 Conference on Lasers and Electro-Optics Europe and European Quantum Electronics Conference, CLEO/Europe-EQEC 2023).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2022

  Accelerating IVIM and DTI for assessing microstructural changes after acute hamstring injury

  Rauh, S. S., Monte, J. R. C., Hooijmans, M. T., Suskens, J. J. M., Gurney-Champion, O. J., Tol, J. L., Maas, M., Nederveen, A. J. & Strijkers, G. J., 2022, ISMRM.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Deep Learning for Ventricular Arrhythmia Prediction Using Fibrosis Segmentations on Cardiac MRI Data

  van Lieshout, F. E., Klein, R. C., Kolk, M. Z., van Geijtenbeek, K., Vos, R., Ruiperez-Campillo, S., Feng, R., Deb, B., Ganesan, P., Knops, R., Isgum, I., Narayan, S., Bekkers, E., Vos, B. & Tjong, F. V. Y., 2022, 2022 Computing in Cardiology, CinC 2022. IEEE Computer Society, Vol. 2022-September. (Computing in Cardiology).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  Open Access
  1 Citation (Scopus)

• Fast and Robust Overlay Metrology from Visible to Infrared Wavelengths Using Dark-field Digital Holographic Microscopy

  Messinis, C., Van Schaijk, T. T. M., Pandey, N., Tenner, V. T., Koolen, A., Witte, S., De Boer, J. F. & Den Boef, A. J., 2022, Metrology, Inspection, and Process Control XXXVI. Robinson, J. C. & Sendelbach, M. J. (eds.). SPIE, Vol. 12053. p. 90-100 11 p. 120530B. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 12053).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• fMRI-S4: Learning Short- and Long-Range Dynamic fMRI Dependencies Using 1D Convolutions and State Space Models

  el-Gazzar, A., Thomas, R. M. & van Wingen, G., 2022, Machine Learning in Clinical Neuroimaging - 5th International Workshop, MLCN 2022, Held in Conjunction with MICCAI 2022, Proceedings. Abdulkadir, A., Bathula, D. R., Dvornek, N. C., Habes, M., Kia, S. M., Kumar, V. & Wolfers, T. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 13596 LNCS. p. 158-168 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13596 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)

• Generative adversarial network for coronary artery plaque synthesis in coronary CT angiography

  Zhai, Z., Wang, Y., de Vos, B. D., Noothout, J. M. H., Planken, N. & Išgum, I., 2022, Medical Imaging 2022: Image Processing. Colliot, O., Isgum, I., Landman, B. A. & Loew, M. H. (eds.). SPIE, 120321R. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12032).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Improving the precision of semiconductor overlay measurements using dark-field digital holographic microscopy

  Adhikary, M., Cromwijk, T., Messinis, C., de Wit, J., Konijnenberg, S., Witte, S., de Boer, J. & den Boef, A. J., 2022, Computational Optical Sensing and Imaging, COSI 2022: Proceedings Imaging and Applied Optics Congress 2022 (3D, AOA, COSI, ISA, pcAOP). Optica Publishing Group (formerly OSA), (Optics InfoBase Conference Papers).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Miniaturized time-resolved fluorescence spectrometer system

  Gasser, A., Shcheglov, A., Lapauw, T., van den Dries, T., Ingelberts, H., Hoving, W., Aalders, M. & Kuijk, M., 2022, Photonic Instrumentation Engineering IX. Busse, L. E., Soskind, Y. & Mock, P. C. (eds.). SPIE, Vol. 12008. 120080B. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 12008).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)

• Weakly-Supervised Deep Learning for Left Ventricle Fibrosis Segmentation in Cardiac MRI Using Image-Level Labels

  on behalf of the DEEP RISK ICD study consortium, 2022, 2022 Computing in Cardiology, CinC 2022. IEEE Computer Society, Vol. 2022-September. (Computing in Cardiology).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  Open Access
• 2021

  A Data Fusion Method For The Delayering Of X-Ray Fluorescence Images Of Painted Works Of Art

  Fiske, L. D., Katsaggelos, A. K., Aalders, M. C. G., Alfeld, M., Walton, M. & Cossairt, O., 2021, 2021 IEEE International Conference on Image Processing, ICIP 2021 - Proceedings: proceedings : 19-22 September 2021, Anchorage, Alaska, USA. Piscataway, NJ: IEEE Computer Society Press, p. 3458-3462 5 p. (Proceedings - International Conference on Image Processing, ICIP; vol. 2021-September).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  5 Citations (Scopus)

• An Automated and High Precision Quantitative Analysis of the ACR Phantom

  Markiewicz, P. J., da Costa-Luis, C., Dickson, J., Barnes, A., Krokos, G., MacKewn, J., Clark, T., Wimberley, C., MacNaught, G., Yaqub, M. M., Gispert, J. D., Hutton, B. F., Marsden, P., Hammers, A., Reader, A. J., Ourselin, S., Herholz, K., Matthews, J. C. & Barkhof, F., 2021, 2021 IEEE Nuclear Science Symposium and Medical Imaging Conference Record, NSS/MIC 2021 and 28th International Symposium on Room-Temperature Semiconductor Detectors, RTSD 2022. Tomita, H. & Nakamura, T. (eds.). Institute of Electrical and Electronics Engineers Inc., (2021 IEEE Nuclear Science Symposium and Medical Imaging Conference Record, NSS/MIC 2021 and 28th International Symposium on Room-Temperature Semiconductor Detectors, RTSD 2022).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• A Python Hands-on Tutorial on Network and Topological Neuroscience

  Centeno, E. G. Z., Moreni, G., Vriend, C., Douw, L. & Santos, F. A. N. B., 2021, Geometric Science of Information - 5th International Conference, GSI 2021, Proceedings. Nielsen, F. & Barbaresco, F. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 12829 LNCS. p. 665-673 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12829 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Automatic segmentation of the olfactory bulbs in MRI

  Noothout, J. M. H., Postma, E. M., Boesveldt, S., de Vos, B. D., Smeets, P. A. M. & Išgum, I., 2021, Medical Imaging 2021: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, Vol. 11596. 115961J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11596).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  4 Citations (Scopus)

• Automatic whole-heart segmentation in 4D TAVI treatment planning CT

  Bruns, S., Wolterink, J. M., van den Boogert, T. P. W., Henriques, J. P., Baan, J., Planken, R. N. & Išgum, I., 2021, Medical Imaging 2021: Image Processing: 15-19 February 2021, online only, Unitred States. Išgum, I., Landman, B. A., Isgum, I. & Landman, B. A. (eds.). Bellingham, WA: SPIE, Vol. 1. 8 p. 115960B. (Proceedings of SPIE; vol. 11596)(Progress in Biomedical Optics and Imaging; vol. 22, no. 2).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  2 Citations (Scopus)

• Combined analysis of coronary arteries and the left ventricular myocardium in cardiac CT angiography for detection of patients with functionally significant stenosis

  Zreik, M., Hampe, N., Leiner, T., Khalili, N., Wolterink, J. M., Voskuil, M., Viergever, M. A. & Išgum, I., 2021, Medical Imaging 2021: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, Vol. 11596. 115961F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11596).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)

• Dynamic Adaptive Spatio-Temporal Graph Convolution for fMRI Modelling

  el-Gazzar, A., Thomas, R. M. & van Wingen, G., 2021, Machine Learning in Clinical Neuroimaging - 4th International Workshop, MLCN 2021, Held in Conjunction with MICCAI 2021, Proceedings. Abdulkadir, A., Kia, S. M., Habes, M., Kumar, V., Rondina, J. M., Tax, C. & Wolfers, T. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 13001 LNCS. p. 125-134 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13001 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  8 Citations (Scopus)

• Endoscopic polarization sensitive optical coherence tomography (PS-OCT) for in vivo imaging of lungs periphery in bronchial thermoplasty treated asthma patients

  Vaselli, M., Wijsman, P. C., Willemse, J., Annema, J. T., Bonta, P. I. & de Boer, J. F., 2021, European Conferences on Biomedical Optics, ECBO 2021. The Optical Society, ETh2C.2. (Optics InfoBase Conference Papers).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Endoscopic polarization sensitive optical coherence tomography (PS-OCT) for in-vivo imaging of lungs periphery in bronchial thermoplasty treated asthma patients

  Vaselli, M., Wijsman, P. C., Willemse, J., Annema, J. T., Bonta, P. I. & de Boer, J. F., 2021, Optical Coherence Imaging Techniques and Imaging in Scattering Media IV. Vakoc, B. J., Wojtkowski, M. & Yasuno, Y. (eds.). SPIE, Vol. 11924. 119240T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Evaluation of the Robustness of Learned MR Image Reconstruction to Systematic Deviations Between Training and Test Data for the Models from the fastMRI Challenge

  Johnson, P. M., Jeong, G., Hammernik, K., Schlemper, J., Qin, C., Duan, J., Rueckert, D., Lee, J., Pezzotti, N., de Weerdt, E., Yousefi, S., Elmahdy, M. S., van Gemert, J. H. F., Schülke, C., Doneva, M., Nielsen, T., Kastryulin, S., Lelieveldt, B. P. F., van Osch, M. J. P., Staring, M., & 21 othersChen, E. Z., Wang, P., Chen, X., Chen, T., Patel, V. M., Sun, S., Shin, H., Jun, Y., Eo, T., Kim, S., Kim, T., Hwang, D., Putzky, P., Karkalousos, D., Teuwen, J., Miriakov, N., Bakker, B., Caan, M., Welling, M., Muckley, M. J. & Knoll, F., 2021, Machine Learning for Medical Image Reconstruction - 4th International Workshop, MLMIR 2021, Held in Conjunction with MICCAI 2021, Proceedings. Haq, N., Johnson, P., Maier, A., Würfl, T. & Yoo, J. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 12964 LNCS. p. 25-34 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12964 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  2 Citations (Scopus)

• Fast and robust diffraction based overlay metrology using dark-field digital holographic microscopy

  van Schaijk, T. T. M., Messinis, C., Pandey, N., Tenner, V. T., Koolen, A., Witte, S., de Boer, J. F. & den Boef, A. J., 2021, Optical Measurement Systems for Industrial Inspection XII. Lehmann, P., Osten, W. & Goncalves, A. A. (eds.). SPIE, 117820O. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 11782).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Graph attention networks for segment labeling in coronary artery trees

  Hampe, N., Wolterink, J. M., Collet, C., Planken, N. & Išgum, I., 2021, Medical Imaging 2021: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, Vol. 11596. 115961I. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11596).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  6 Citations (Scopus)

• Lens aberration calibration and correction with plasmonic nanoparticles in off-axis dark-field digital holographic microscope for semiconductor metrology

  Messinis, C., van Schaijk, T. T. M., Pandey, N., Koolen, A., de Boer, J. F., Witte, S. & den Boef, A. J., 2021, Computational Optical Sensing and Imaging 2021 (COSI): [Proceedings]. OSA - The Optical Society, CF2E.7. (Optics InfoBase Conference Papers).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Lesion-wise evaluation for effective performance monitoring of small object segmentation

  Groothuis, I., Sudre, C. H., Ingala, S., Barnes, J., Gispert, J. D., Sørensen, L., Pai, A., Nielsen, M., Ourselin, S., Cardoso, M. J., Barkhof, F. & Modat, M., 2021, Medical Imaging 2021: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, Vol. 11596. 1159608. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11596).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Multimodal imaging of snap-frozen AD human brain tissue

  Lochocki, B., Boon, B. D. C., Verheul, S. R., Zada, L., Hoozemans, J. J. M., Ariese, F. & de Boer, J. F., 2021, Translational Biophotonics: Diagnostics and Therapeutics: [Proceedings]. Huang, Z. & Lilge, L. D. (eds.). SPIE, Vol. 11919. 119190H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Polarization-sensitive imaging of diseased and healthy lungs with histological validation

  Willemse, J., Wener, R. R., Feroldi, F., Vaselli, M., Kwakkel-van Erp, J. M., van de Graaf, E. A., Thunnissen, E. & de Boer, J. F., 2021, Optical Coherence Imaging Techniques and Imaging in Scattering Media IV. Vakoc, B. J., Wojtkowski, M. & Yasuno, Y. (eds.). SPIE, Vol. 11924. 3 p. 119240U. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Resolution limits of compressive imaging via a multimode fiber

  Lochocki, B., Abrashitova, K., de Boer, J. F. & Amitonova, L. V., 2021, European Conferences on Biomedical Optics 2021 (ECBO): [Proceedings]. OSA - The Optical Society, ES1A.5. (Optics InfoBase Conference Papers).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Resolution limits of compressive imaging via a multimode fiber

  Lochocki, B., Abrashitova, K., de Boer, J. F. & Amitonova, L. V., 2021, Advances in Microscopic Imaging III. Beaurepaire, E., Ben-Yakar, A. & Park, Y. (eds.). SPIE, Vol. 11922. 2 p. 1192209. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Speckle-based super-resolution imaging via a multimode fiber

  Verweg, M. V., Lochocki, B., de Boer, J. F. & Amitonova, L. V., 2021, European Conferences on Biomedical Optics 2021 (ECBO): [Proceedings]. OSA - The Optical Society, ES1A.4. (Optics InfoBase Conference Papers).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Speckle-Based Super-Resolution Imaging via a Multimode Fiber

  Verweg, M. V., Lochocki, B., de Boer, J. F. & Amitonova, L. V., 2021, Advances in Microscopic Imaging III. Beaurepaire, E., Ben-Yakar, A. & Park, Y. (eds.). SPIE, Vol. 11922. 2 p. 1192208. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Stimulated Raman Scattering Microscopy Reveals Silicone in Breast Tissue

  Schmidt, R. W., van Haasterecht, L., Zada, L., de Bakker, E., Barbé, E., Leslie, H. A., Vethaak, A. D., Gibbs, S., de Boer, J. F., Niessen, F. B., van Zuijlen, P. P. M., Groot, M. L. & Ariese, F., 2021, Translational Biophotonics: Diagnostics and Therapeutics. Huang, Z. & Lilge, L. D. (eds.). SPIE, Vol. 11919. 3 p. 119191S. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11919).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Transformer-Based Deep Survival Analysis

  Hu, S., Fridgeirsson, E. A., van Wingen, G. & Welling, M., 2021, Proceedings of AAAI Spring Symposium on Survival Prediction - Algorithms, Challenges and Applications 2021. Greiner, R., Kumar, N., Gerds, T. A. & van der Schaar, M. (eds.). ML Research Press, Vol. 146. p. 132-148 (Proceedings of Machine Learning Research).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  18 Citations (Scopus)

• Translation of third and second harmonic generation microscopy into the clinic for the assessment of fresh lung tumor tissue

  van Huizen, L. M. G., Daniels, J. M. A., Radonic, T., van Mourik, F., Dickhoff, C., Bahce, I., Annema, J. T. & Groot, M. L., 2021, European Conferences on Biomedical Optics, ECBO 2021. The Optical Society, ETu5A.1. (Optics InfoBase Conference Papers).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Translation of third and second harmonic generation microscopy into the clinic for the assessment of fresh lung tumor tissue

  van Huizen, L. M. G., Daniels, J. M. A., Radonic, T., van Mourik, F., Dickhoff, C., Bahce, I., Annema, J. T. & Groot, M. L., 2021, Translational Biophotonics: Diagnostics and Therapeutics. Huang, Z. & Lilge, L. D. (eds.). SPIE, Vol. 11919. 3 p. 1191910. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

• Unsupervised super-resolution: Creating high-resolution medical images from low-resolution anisotropic examples

  Sander, J., de Vos, B. D. & Išgum, I., 2021, Medical Imaging 2021: Image Processing. Isgum, I., Landman, B. A., Išgum, I. & Landman, B. A. (eds.). Bellingham, WA: SPIE, Vol. 11596. 7 p. 115960E. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11596).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  10 Citations (Scopus)

• Untangling the Small Intestine in 3D cine-MRI using Deep Stochastic Tracking

  van Harten, L. D., de Jonge, C. S., Stoker, J. & Išgum, I., 2021, Proceedings of the 4th Conference on Medical Imaging with Deep Learning, MIDL 2021. Heinrich, M., Dou, Q., de Bruijne, M., Lellmann, J., Schlaefer, A. & Ernst, F. (eds.). ML Research Press, Vol. 143. p. 802-812 (Proceedings of Machine Learning Research).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  3 Citations (Scopus)

• Untangling the small intestine in 4D MRI using deep stochastic tracking

  van Harten, L. D., de Jonge, C. S., Stoker, J. & Isgum, I., 2021, Medical Imaging with Deep Learning.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
• 2020

  Automatic online quality control of synthetic CTs

  van Harten, L. D., Wolterink, J. M., Verhoeff, J. J. C. & Išgum, I., 2020, Medical Imaging 2020: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, Vol. 11313. 2549286. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11313).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  3 Citations (Scopus)

• Disentangling human error from the ground truth in segmentation of medical images

  Zhang, L., Tanno, R., Xu, M-C., Jin, C., Jacob, J., Ciccarelli, O., Barkhof, F. & Alexander, D. C., 2020, 34th Conference on Neural Information Processing Systems, NeurIPS 2020. Neural Information Processing Systems Foundation, Vol. 2020-December. (Advances in Neural Information Processing Systems).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  37 Citations (Scopus)

• Exploiting clinically available delineations for cnn-based segmentation in radiotherapy treatment planning

  van Harten, L. D., Wolterink, J. M., Verhoeff, J. J. C. & Išgum, I., 2020, Medical Imaging 2020: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, Vol. 11313. 2549653. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11313).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  1 Citation (Scopus)

• Learning to segment when experts disagree

  Zhang, L., Tanno, R., Bronik, K., Jin, C., Nachev, P., Barkhof, F., Ciccarelli, O. & Alexander, D. C., 2020, Medical Image Computing and Computer Assisted Intervention – MICCAI 2020 - 23rd International Conference, Proceedings. Martel, A. L., Abolmaesumi, P., Stoyanov, D., Mateus, D., Zuluaga, M. A., Zhou, S. K., Racoceanu, D. & Joskowicz, L. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 12261 LNCS. p. 179-190 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
  10 Citations (Scopus)